rebasing to upstream main. Hopefully everythign still works #7

	name: CI

	on:
	workflow_dispatch:
	pull_request:
	push:
	branches:
	- main

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	env:
	# Many color libraries just need this to be set to any value, but at least
	# one distinguishes color depth, where "3" -> "256-bit color".
	FORCE_COLOR: 3
	PROJECT_NAME: "ca_biositing"

	jobs:
	checks:
	name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }}
	runs-on: ${{ matrix.runs-on }}
	strategy:
	fail-fast: false
	matrix:
	python-version: ["py312", "py313"]
	runs-on: [ubuntu-latest, macos-14]

	steps:
	- uses: actions/checkout@v6
	with:
	fetch-depth: 0

	- name: Set up pixi
	uses: prefix-dev/setup-pixi@v0.9.3
	with:
	pixi-version: v0.59.0
	environments: ${{ matrix.python-version }}

	- name: Print pixi version
	run: pixi --version

	- name: Test ca_biositing.datamodels
	run: \|
	pixi run pytest src/ca_biositing/datamodels --cov=ca_biositing.datamodels --cov-report=xml --cov-append --cov-report=term-missing

	- name: Test ca_biositing.pipeline
	run: \|
	pixi run pytest src/ca_biositing/pipeline --cov=ca_biositing.pipeline --cov-report=xml --cov-append --cov-report=term-missing

	- name: Test ca_biositing.webservice
	run: \|
	pixi run pytest src/ca_biositing/webservice --cov=ca_biositing.webservice --cov-report=xml --cov-append --cov-report=term-missing

	- name: Upload coverage report
	uses: codecov/codecov-action@v5.5.1
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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