Using different tissue gene expression file in DEPICT

[kkdey]

I am thinking of running DEPICT using a different tissue-specific gene expression Z data than the one that is used by DEPICT by default. However, I could not find a function that takes user-defined datasets for pathways and/or tissue expression. Is there a functionality to do so, and if so can you please guide me towards it?

Thanks so much.

[tanyaphung]

Hi @kkdey, have you figured out how to format a different RNAseq data to be used with DEPICT? If so, would you mind sharing? Thank you!