Make specs, rates and fluxes arrays dictionary (or dataframe) #3
Description
Make specs, rates and fluxes arrays a dictionary (or dataframe with symbols of species/reactions as column names) to avoid having to make the search for species/reactions more convenient without find.
Dictionaries seem better solution as the are not bound to the same column length and having to have a workaround wrapping it in an outer array and are fastest.
- Test performance finding every entry for a 10.000 integer array:
- Dictionary (fastest): 0.0023
- DataFrame: 0.0118
- Find: 0.4907
- Findin (slowest): 1.2959
- Transform specs, rates, and flux arrays into dictionaries
- Revise search in DSMACCanalysis
- Make MCM version obsolete (not needed as no translation back from GECKO-A to MCM in newly structured scripts), adjust input files and read routines
- Adjust plotting to new data format