Repositories list

• multiomix

  Public
  Multiomix platform source code

  pythondockerdjango+ 2bioinformaticsepigenomics

  TypeScript

  •

  GNU General Public License v3.0

  •2•8•0•4•Updated Jan 5, 2026Jan 5, 2026

• xena-tcga-gtex-extract

  Public
  High-performance scripts for extracting TCGA and GTEX data from the UCSC Xena log2(expected counts) database. The purpose of this repository is to make the data available for differential expression analysis.

  R

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• differential_expression_analysis

  Public
  tests of differential expression analysis

  R

  •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

• sophie-mari

  Public
  Replication of the results of "Predicting tumor response to drugs based on gene-expression biomarkers of sensitivity learned from cancer cell lines"

  Python

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• modulector

  Public
  An open platform which provides information about miRNAs and genes from different popular databases

  gene-expressionpubmedmethylation+ 4mrnamirnamirna-mrna-interactionmultiomix

  Python

  •

  MIT License

  •0•5•0•0•Updated Jan 2, 2025Jan 2, 2025

• BioAPI

  Public
  A powerful abstraction of gene databases

  bioinformaticsgene-expressiongene-regulation+ 8gene-ontologydrug-discoverygenesbioinformatics-tooldrug-target-interactionsgene-enrichmentgene-relationships+ 1

  Python

  •0•7•0•0•Updated Dec 17, 2024Dec 17, 2024

• omicsdatascience-site-new

  Public
  Dockerfile

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• Benchmarks-GGCA-vs-WGCNA

  Public
  This benchmark measures the performance of correlation algorithms using transcriptomic data between GGCA and WGCNA tools

  C

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• multiomix-aws-emr

  Public
  AWS EMR Spark Job abstraction for Multiomix project.

  Python

  •

  MIT License

  •0•1•0•0•Updated Nov 21, 2023Nov 21, 2023

• omicsdatascience-site

  Public
  OmicsDatascience site source

  TypeScript

  •0•1•0•0•Updated Nov 3, 2023Nov 3, 2023

• multiomix-backup-tool-gdrive

  Public
  A set of scripts in bash and python for generate multiomix backups and upload them into a google drive account.

  Shell

  •

  MIT License

  •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023