For information: Test not passing because of `na.omit` from R

[baugetfa]

For information the following type of error in windows-latest tests:

  E               rpy2.rinterface_lib.embedded.RRuntimeError: Error in na.omit(match(colnames(axeT), conv)) : 
  E                 could not find function "na.omit"

Do not happen locally with either conda-build or directly with pytest.

Both CI and local have the same environment in term of packages.

[christian34]

After some investigations:

• On my local windows machine installing all adel dependences (including rpy2) workrs fine and all test pass
• on CI, windows GH runner cannot install properly r-base (required by rpy2), because of an incompatibility betwwen conda build toolchain and r-base/mingw compiling toolchain => no 'fully functional' rpy2 available in conda build test env
• skipping rpy2 related test on windows CI works (see ignore R/rpy2 tests on windows CI #57)

[christian34]

@baugetfa @pradal , may be for now we can keep it like that (not so good as adel-dependant test on windows will also have to be marked the same way).

longer term temptative may be:

• wait for rpy2 to be repaired on windows (it was the case a month ago !): then test 'auto reactivate' (see ignore R/rpy2 tests on windows CI #57)
• try micromamba on CI instead on miniconda (GPT thinks it produce less clobbering issues)
• add an option to CI to run test 'outside' conda build: conda build with no test + upload the built artifact + install this fresh artifact in a new env and run pytest .