ImportError: libmpi.so.12: cannot open shared object file: No such file or directory

[zsn2021]

System: Ubuntu 18 04
Compiler: PyCharm
There was a problem installing the dependency package mpi4py==3.0.2
Does anyone have a similar problem? How to solve it?

[Novice-me]

Solution:

1. Check if any MPI library is installed (e.g. MPICH, OPENMPI）, if not, you can install OPENMPI by referring to the following tutorial from Microsoft
   https://docs.microsoft.com/en-us/cognitive-toolkit/Setup-CNTK-on-Linux#open-mpi
2. After the installation is complete, you can use the following command to locate libmpi.so.12
sudo find ./ -name libmpi.so.12
3. Usually, the problem has been solved and you can install the mpi4py library. But if you are using Anaconda or other virtual env, you also need to copy libmpi.so.12 to the lib folder of env

[xuedingebuaimao]

I directly used the command "conda install mpi4py", which installed the following packages.

The following NEW packages will be INSTALLED:

ipykernel anaconda/pkgs/main/linux-64::ipykernel-6.9.1-py37h06a4308_0
mpi anaconda/pkgs/main/linux-64::mpi-1.0-mpich
mpi4py anaconda/pkgs/main/linux-64::mpi4py-3.1.4-py37hfc96bbd_0
mpich anaconda/pkgs/main/linux-64::mpich-3.3.2-external_0

Then I ran "from mpi4py import MPI" and got the ImportError. Initially, I found there was no "libmpi.so.12" in my conda env's lib folder, which I thought corresponds to the 3rd point you mentioned, so I copied it from pkgs/... and now have the following "libmpi.so.12"

/home/nico/anaconda3/lib/libmpi.so.12
/home/nico/anaconda3/envs/condavenv1/lib/libmpi.so.12
/home/nico/anaconda3/pkgs/mpich-3.3.2-hc856adb_0/lib/libmpi.so.12

but still get the same error.

[wfc1102]

Same error here:
from mpi4py import MPI
ImportError: libmpi.so.12: cannot open shared object file: No such file or directory

conda install -c conda-forge mpi4py
conda install mpi4py

conda uninstall mpi4py
pip uninstall mpi4py

install and uninstall several times does not work. When conda uninstall it shows:

mpi-1.0-mpich
mpi4py-3.1.4-py38hfc96bbd_0
mpich-3.3.2-external_0

Before give up, I tried

pip install mpi4py

Successfully installed mpi4py-3.1.5
My program runs smoothly. It seems the mpi4py version matters. conda install differs from pip install by selecting different version at this issue.

[fatidian1]

In my case I needed to install impi-rt
pip install mpi4py impi-rt
You can check mpi4py documentation for reference: https://mpi4py.readthedocs.io/en/stable/install.html
Look at boxes with tips 😄