polyfun.py is not loading all the downloaded LD files to --compute-ldscores

[AppWick-hub]

Hi,
I have a query related to polyfun.py:

I have downloaded the list of files using ukb_regions.tsv.gz. There were 2768 .npz files, however, when I proceed with the following approach to compute ldscores for all Chr:

• python ./polyfun.py --compute-ldscores --output-prefix ./finemap --ld-ukb --allow-missing --ld-dir LD_Cache/

Its actually loading around 930 .npz LD files from the downloaded set of files. I wonder why its not loading all the .npz LD files?

N.B: In case of finemapper.py, its running for around 2741 regions/files (thats fine I guess, since not all these region have SNPs to finemap).

Kind regards, Apurba

[omerwe]

Most probably you don't even have a single annotation in some of the regions?