Wrong pixel values in ome.zarr made from ome.tiff

[pwalczysko]

1. Convert the ...downloads.openmicroscopy.org/images/OME-TIFF/2016-06/binaryonly images into zarr using bf2raw version 0.4.0, using the command
2. bioformats2raw binaryonly/multifile-Z1.ome.tiff multifile-Z1.ome.zarr
3. Import the resulting multifile-Z1.ome.zarr folder to OMERO using the command (note the usage of the --depth 10)
4. omero import --transfer=ln_s --skip=checksum --parallel-upload=10 --skip=minmax --depth 10 multifile-Z1.ome.zarr/
5. Observe that the image in OMERO https://merge-ci.openmicroscopy.org/web/webclient/?show=image-228872 has all pixel values 0. This is not expected, as the original ome.tiff is looking as follows https://merge-ci.openmicroscopy.org/web/webclient/?show=image-228824 (user-8)

[sbesson]

Is this still the case or was it an intermediate result during the testing of #31 ?

[pwalczysko]

This is solved by the previous PR, sorry, did not close