get_fasta_info/INSTALL at main · nylander/get_fasta_info · GitHub

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# Installation instructions for Get FAST{A,Q} Info

## Install from bioconda

### Prerequisites

Requires a local [conda (mamba) installation](https://github.com/conda-forge/miniforge).

### Install

    $ mamba install -c bioconda get_fasta_info
    # Or to create a new environment
    $ mamba create -c bioconda --name myenvname get_fasta_info

## Building from Source

### Prerequisites

GCC, Make, zlib library (development files).  Depending on how you choose to
install (see examples below), you may also need CMake Autoconf and Automake.

On a Debian based system, they can be installed by

    $ sudo apt install gcc make cmake autoconf automake zlib1g-dev

### Build using CMake

   $ git clone https://github.com/nylander/get_fasta_info.git
   $ cd get_fasta_info
   $ mkdir build
   $ cd build
   $ cmake ..
   $ make

   $ sudo make install
   # Alt.
   $ cmake --install . --prefix $HOME

### Build using Autoconf and Automake

   $ git clone https://github.com/nylander/get_fasta_info.git
   $ cd get_fasta_info
   $ ./autogen.sh
   $ ./configure
   $ make

   $ sudo make install
   # Alt.
   $ ./configure --prefix=$HOME
   $ make
   $ make install

### Download distribution files and compile locally

Download a release source code (zip or tar.gz from Assets,
<https://github.com/nylander/get_fasta_info/releases>), and uncompress.
From inside the decompressed folder, run:

    $ ./configure
    $ make
    $ sudo make install
    # Alt.
    $ ./configure --prefix=$HOME
    $ make
    $ make install