Fixed syntax for code blocks

Author: vsmagalhaes

docs/AstroHACK_under_a_venv_for_locit.rst

@@ -1,5 +1,5 @@
 Obtaining Antenna position Corrections
-~~~~~~~~
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 This guide assumes that astrohack was installed in a virtual
 environment (venv) with the convenience functions as described `here <./Installing-astrohack-in-a-virtual-environment>`_
@@ -12,7 +12,7 @@ The first step in the data reduction is to download the scripts to be
 used in the data reduction process, this can be done by using one of the
 convenience functions created by the installation script:
 
-.. code-block:: bash
+.. code-block:: sh
 		
    $ get_locit_scripts
    
@@ -38,14 +38,14 @@ This script contains a basic command line interface to control its
 parameters, because of this it must be run in CASA in the command line
 mode, i.e.:
 
-.. code-block:: bash
+.. code-block:: sh
 
    $ casa -c pre_locit_script.py -h
 
 The output of the pre_locit_script.py script called with the **-h** flag
 is the help which should look like this:
 
-.. code-block:: bash
+.. code-block::
 
    $ casa -c pre_locit_script.py baseline.ms teste1 -h
 
@@ -91,7 +91,7 @@ will throw an error before executing any CASA step.
 
 A typical execution call will look like this:
 
-.. code-block:: bash
+.. code-block:: sh
 
    $ casa -c pre_locit_script.py my_dl_asdm baseline-241125 
 
@@ -108,13 +108,14 @@ Running exec_locit.py
 For running **exec_locit.py** we need to first activate the astrohack
 venv:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ activate_astrohack
 
 With the venv activated we can then call **exec_locit.py** with the **-h**
 flag to have a look at its help:
 
-.. code-block:: bash
+.. code-block:: 
 		
    $ python exec_locit.py -h
    usage: exec_locit.py [-h] [-d] [-a ANTENNAS] [-c COMBINATION] [-p POLARIZATION] [-k] [-e ELEVATION_LIMIT] [-f FIT_ENGINE] caltable
@@ -154,9 +155,9 @@ few antennas for which we want antenna position corrections and that
 we want to combine the spectral windows using the phase difference
 between them.
 
-.. code-block:: bash
+.. code-block:: sh
 		
-   $ python exec_locit.py baseline-241125-pha.cal -a 'ea06,ea13,ea27' -c difference
+   python exec_locit.py baseline-241125-pha.cal -a 'ea06,ea13,ea27' -c difference
 
 
 Exporting results to parminator
@@ -167,7 +168,7 @@ to a parminator file by calling the **export_to_parminator.py** script.
 Like the other scripts it has a help that can be accessed with the
 **-h** flag:
 
-.. code-block:: bash
+.. code-block:: 
 		
    $ python export_to_parminator.py -h
    usage: export_to_parminator.py [-h] [-t CORRECTION_THRESHOLD] [-a ANTENNAS] position_file parminator_file
@@ -191,9 +192,9 @@ Like the other scripts it has a help that can be accessed with the
 
 A typical call to **export_to_parminator.py** shall look like this:
 
-.. code-block:: bash
+.. code-block:: sh
 		
-		$ python export_to_parminator.py baseline-241125.position.zarr 241125-baseline.par -t 0.05 -a 'ea13,ea27'
+   $ python export_to_parminator.py baseline-241125.position.zarr 241125-baseline.par -t 0.05 -a 'ea13,ea27'
 
 In this call we have chosen a threshold for corrections of 5 cm and to
 only export corrections for antennas ea13 and ea27 which will be

docs/astrohack_installation.rst

@@ -23,21 +23,24 @@ python supported by astrohack. A fresh environment is recommended as
 to avoid conflicting dependencies with other packages. To create such
 an environment:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ conda create --name astrohack python=3.12 --no-default-packages
    $ conda activate astrohack
 
 On macos it is required to pre-install `python-casacore
 <https://github.com/casacore/python-casacore>`_, before installing
 astrohack:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ conda install -c conda-forge python-casacore
 
 Astrohack is not yet available for download directly from conda-forge,
 therefore we suggest to install astrohack by using pip:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ pip install astrohack
 
 It is also possible to install astrohack from source by downloading
@@ -46,7 +49,8 @@ the `source code
 directly from github. With the zip extracted you can then navigate to
 the root directory and make a local pip installation:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ cd <Astrohack_root_dir>
    $ pip install -e .
 		
@@ -72,7 +76,7 @@ The installation script can be downloaded `here
 run the installation script it is necessary to make it executable, and
 then it can be executed:
 
-.. code-block:: bash
+.. code-block:: sh
 		
    $ chmod u+x astrohack_install.sh
    $ ./astrohack_install.sh
@@ -96,7 +100,7 @@ convenience functions.
 When the installation is done the user can check that it worked by
 invoking the environment:
 
-.. code-block:: bash
+.. code-block:: sh
 		
    $ activate_astrohack
 
@@ -112,7 +116,7 @@ If the installation happened without any problems the user will see no
 error messages.  To exit the venv the user should use the deactivate
 command:
 
-.. code-block:: bash
+.. code-block:: sh
 		
    $ deactivate
 
@@ -127,14 +131,16 @@ functionalities and/or bug fixes. To update astrohack it is necessary
 to first get into the venv and then we can call pip to update
 astrohack:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ activate_astrohack
    $ pip install astrohack --upgrade
 
 If the user is not going to use astrohack straight away it is
 recommended to deactivate the venv after doing the update:
 
-.. code-block:: bash
+.. code-block:: sh
+		
    $ deactivate
 
 Installation or execution problems