arch3d/pyproject.toml at main · ngalioto/arch3d · GitHub

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[build-system]
requires = ["setuptools >= 61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "arch3d"
version = "0.1.0"

requires-python = ">=3.8"
authors = [
  {name = "Nicholas Galioto", email = "ngalioto@umich.edu"},
]

description = "A foundation model for global genome architecture."
readme = "README.md"
license = {file = "LICENSE"}
dependencies = [
  "torch",
  "lightning",
  "PyYAML",
  "numpy>=1.9,<2",
  "scipy",
  "pandas",
  "cooler",
  "h5py",
  "tqdm",
  "pybloom-live",
  "scikit-learn",
  "joblib",
  "wandb",
]
keywords = ["arch3d", "biology", "digital biology", "foundation model", "Hi-C", "genome architecture", "global genome architecture"]
classifiers = [
  "Programming Language :: Python",
  "Development Status :: 1 - Planning",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved :: MIT License",
  "Natural Language :: English",
  "Topic :: Scientific/Engineering :: Artificial Intelligence",
  "Topic :: Scientific/Engineering :: Bio-Informatics"
]

[project.urls]
Homepage = "https://rajapakse.lab.medicine.umich.edu/"
Repository = "https://github.com/ngalioto/arch3d"

[tool.setuptools.packages.find]
include = ["digitalcell*"]