DEEPVARIANT Model type for ONP data

[full-metal-tech]

Description of the bug

modules.config stated that model type for DeepVariant is only WGS

DeepVariant stated in V1.5 release, that ONT_R104 option is available, otherwise should be using PEPPER-Margin-DeepVariant.

New model datatype: --model_type ONT_R104 is a new option. Starting from v1.5, DeepVariant natively supports ONT R10.4 simplex and duplex data. For older ONT chemistry, please continue to use PEPPER-Margin-DeepVariant.

process { withName: DEEPVARIANT { ext.args = { "--model_type WGS" } publishDir = [ path: { "${params.outdir}/variant_calling/deepvariant" }, mode: 'copy', enabled: true, saveAs: { filename -> filename.equals('versions.yml') ? null : filename } ] } }

Is using Nanoseq with DEEPVARIANT - WGS suitable for ONP long read?

Command used and terminal output

Relevant files

No response

System information

No response