diff --git a/modules/nf-core/ichorcna/createpon/environment.yml b/modules/nf-core/ichorcna/createpon/environment.yml index 54df91b4f29..5073fc57792 100644 --- a/modules/nf-core/ichorcna/createpon/environment.yml +++ b/modules/nf-core/ichorcna/createpon/environment.yml @@ -4,4 +4,4 @@ channels: - conda-forge - bioconda dependencies: - - bioconda::r-ichorcna=0.5.1 + - bioconda::r-ichorcna=0.5.1=r44hdfd78af_1 diff --git a/modules/nf-core/ichorcna/createpon/main.nf b/modules/nf-core/ichorcna/createpon/main.nf index ab19a0332c2..3be817e0c2c 100644 --- a/modules/nf-core/ichorcna/createpon/main.nf +++ b/modules/nf-core/ichorcna/createpon/main.nf @@ -3,8 +3,8 @@ process ICHORCNA_CREATEPON { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/r-ichorcna:0.5.1--r43hdfd78af_0' : - 'biocontainers/r-ichorcna:0.5.1--r43hdfd78af_0' }" + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f07cec06705b4443052d3d7eaccebdbd0078366f7d074bfd4a6893980c6e2c4b/data' : + 'community.wave.seqera.io/library/r-ichorcna:0.5.1--eed4be826f05c9d4' }" input: path wigs diff --git a/modules/nf-core/ichorcna/createpon/tests/main.nf.test.snap b/modules/nf-core/ichorcna/createpon/tests/main.nf.test.snap index fe73d2efe9a..4a2615ab045 100644 --- a/modules/nf-core/ichorcna/createpon/tests/main.nf.test.snap +++ b/modules/nf-core/ichorcna/createpon/tests/main.nf.test.snap @@ -4,21 +4,21 @@ "PoN_median.rds", "PoN_median.txt", [ - "versions.yml:md5,59dbc83520b9e00a736f49ed2513657a" + "versions.yml:md5,4a4f8b452427ec9438cf0ffad62c7a7d" ] ], "meta": { - "nf-test": "0.8.4", - "nextflow": "23.10.1" + "nf-test": "0.9.3", + "nextflow": "25.10.0" }, - "timestamp": "2024-08-06T14:23:09.884294332" + "timestamp": "2025-12-09T11:34:25.04737792" }, "stub": { "content": [ "PoN.rds", "PoN.txt", [ - "versions.yml:md5,59dbc83520b9e00a736f49ed2513657a" + "versions.yml:md5,4a4f8b452427ec9438cf0ffad62c7a7d" ] ], "meta": { @@ -32,13 +32,13 @@ "PoN_median.rds", "PoN_median.txt", [ - "versions.yml:md5,59dbc83520b9e00a736f49ed2513657a" + "versions.yml:md5,4a4f8b452427ec9438cf0ffad62c7a7d" ] ], "meta": { - "nf-test": "0.8.4", - "nextflow": "23.10.1" + "nf-test": "0.9.3", + "nextflow": "25.10.0" }, - "timestamp": "2024-08-06T14:23:29.496424481" + "timestamp": "2025-12-09T11:34:34.559159568" } } \ No newline at end of file diff --git a/modules/nf-core/ichorcna/run/environment.yml b/modules/nf-core/ichorcna/run/environment.yml index 54df91b4f29..5073fc57792 100644 --- a/modules/nf-core/ichorcna/run/environment.yml +++ b/modules/nf-core/ichorcna/run/environment.yml @@ -4,4 +4,4 @@ channels: - conda-forge - bioconda dependencies: - - bioconda::r-ichorcna=0.5.1 + - bioconda::r-ichorcna=0.5.1=r44hdfd78af_1 diff --git a/modules/nf-core/ichorcna/run/main.nf b/modules/nf-core/ichorcna/run/main.nf index 68cf302fc1b..f8fd2eea3a2 100644 --- a/modules/nf-core/ichorcna/run/main.nf +++ b/modules/nf-core/ichorcna/run/main.nf @@ -4,8 +4,8 @@ process ICHORCNA_RUN { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/r-ichorcna:0.5.1--r43hdfd78af_0' : - 'biocontainers/r-ichorcna:0.5.1--r43hdfd78af_0' }" + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/f0/f07cec06705b4443052d3d7eaccebdbd0078366f7d074bfd4a6893980c6e2c4b/data' : + 'community.wave.seqera.io/library/r-ichorcna:0.5.1--eed4be826f05c9d4' }" input: tuple val(meta), path(wig) diff --git a/modules/nf-core/ichorcna/run/tests/main.nf.test.snap b/modules/nf-core/ichorcna/run/tests/main.nf.test.snap index 7a70f7bd51d..13e21009b58 100644 --- a/modules/nf-core/ichorcna/run/tests/main.nf.test.snap +++ b/modules/nf-core/ichorcna/run/tests/main.nf.test.snap @@ -67,7 +67,7 @@ ] ], "8": [ - "versions.yml:md5,d2d30cedd49c7bffdcb74313e8a074c4" + "versions.yml:md5,0395d992ef3e4aa41ed95603f461cc92" ], "cna_seg": [ [ @@ -134,20 +134,20 @@ ] ], "versions": [ - "versions.yml:md5,d2d30cedd49c7bffdcb74313e8a074c4" + "versions.yml:md5,0395d992ef3e4aa41ed95603f461cc92" ] } ], "meta": { - "nf-test": "0.8.4", - "nextflow": "23.10.1" + "nf-test": "0.9.3", + "nextflow": "25.10.0" }, - "timestamp": "2024-08-02T06:38:13.140234725" + "timestamp": "2025-12-09T11:32:23.125027221" }, "no_panel": { "content": [ [ - "versions.yml:md5,d2d30cedd49c7bffdcb74313e8a074c4" + "versions.yml:md5,0395d992ef3e4aa41ed95603f461cc92" ], "test_genomeWide.pdf", "test.RData",