diff --git a/CHANGELOG.md b/CHANGELOG.md index b7af38b8..5de49257 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v1.1.0 'Brass Pigeon' - [2025-07-11] +## v1.1.0 'Brass Pigeon' - [2025-07-21] ### `Added` diff --git a/modules/local/collect_reads/main.nf b/modules/local/collect_reads/main.nf index ee38cb3b..4dbdc87a 100644 --- a/modules/local/collect_reads/main.nf +++ b/modules/local/collect_reads/main.nf @@ -18,7 +18,7 @@ process COLLECT_READS { def prefix = task.ext.prefix ?: "${meta.id}" """ - zcat ${reads} | gzip > ${prefix}_all_reads.fq.gz + cat ${reads} > ${prefix}_all_reads.fq.gz cat <<-END_VERSIONS > versions.yml "${task.process}": gzip: \$(echo \$(gzip --version | head -n1 | sed 's/gzip //')) @@ -28,7 +28,7 @@ process COLLECT_READS { stub: def prefix = task.ext.prefix ?: "${meta.id}" """ - touch ${prefix}_all_reads.fq.gz + touch ${prefix}_all_reads.fq; gzip ${prefix}_all_reads.fq cat <<-END_VERSIONS > versions.yml "${task.process}": gzip: \$(echo \$(gzip --version | head -n1 | sed 's/gzip //'))