Description of feature
Currently genomeassembler does not assemble phased genomes. Clearly, being able to produce phased assemblies would be neat. There are several phasing strategies, for example hifiasm would support HI-C reads, or parental short-reads.
Maybe using https://github.com/yangao07/longcallD to phase the long-reads (assuming a reference is available) pre-assembly and assembling haplotypes from the phased reads would be a alternative option, that requires no additional inputs?
Description of feature
Currently
genomeassemblerdoes not assemble phased genomes. Clearly, being able to produce phased assemblies would be neat. There are several phasing strategies, for examplehifiasmwould support HI-C reads, or parental short-reads.Maybe using https://github.com/yangao07/longcallD to phase the long-reads (assuming a reference is available) pre-assembly and assembling haplotypes from the phased reads would be a alternative option, that requires no additional inputs?