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modules.json
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154 lines (154 loc) · 7.02 KB
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{
"name": "nf-core/genomeassembler",
"homePage": "https://github.com/nf-core/genomeassembler",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"busco/busco": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"flye": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"hifiasm": {
"branch": "master",
"git_sha": "c457b50bf9187031f65b0fb090dc022e8814c729",
"installed_by": ["modules"]
},
"liftoff": {
"branch": "master",
"git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
"installed_by": ["modules"],
"patch": "modules/nf-core/liftoff/liftoff.diff"
},
"lima": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"links": {
"branch": "master",
"git_sha": "bd049fd0244ed914f2d10bed580b49fb44eba914",
"installed_by": ["modules"]
},
"merqury/merqury": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"],
"patch": "modules/nf-core/merqury/merqury/merqury-merqury.diff"
},
"meryl/count": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"meryl/unionsum": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "a532706a19b3d83f14b1d48a6a815ed33eb48b0c",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"pilon": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"porechop/porechop": {
"branch": "master",
"git_sha": "dbf496251becaa54933305bb494b880253a84ee6",
"installed_by": ["modules"]
},
"ragtag/patch": {
"branch": "master",
"git_sha": "62775d90df7565c82bd4ceedca70149529820cff",
"installed_by": ["modules"]
},
"ragtag/scaffold": {
"branch": "master",
"git_sha": "7d163aded9221aef68d8c11cb7a04354a232d89c",
"installed_by": ["modules"]
},
"samtools/fastq": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_stats_samtools", "modules"]
},
"trimgalore": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["bam_sort_stats_samtools", "subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}