Description of the bug
The test_pe was created based on synthetic BCLs generated from FASTQ via fastq2bcl. Such data are suitable for testing the demultiplexing logic, but they do not represent a complete original Illumina run folder and do not contain valid InterOp metrics. Therefore, this is an issue when using MULTIQC_SAV module, which requires real InterOp/*.bin files produced by the sequencer.
This data makes the pipeline test fail when multiqc sav is incorporated to the bcl_demultiplex subworkflow.
The long-term solution would be to find real paired-end data and replace the test_pe with this data.
Command used and terminal output
https://github.com/nf-core/demultiplex/pull/378
Relevant files
https://github.com/nf-core/demultiplex/actions/runs/23069844909/job/67017363996
System information
No response
Description of the bug
The
test_pewas created based on synthetic BCLs generated from FASTQ via fastq2bcl. Such data are suitable for testing the demultiplexing logic, but they do not represent a complete original Illumina run folder and do not contain valid InterOp metrics. Therefore, this is an issue when usingMULTIQC_SAVmodule, which requires real InterOp/*.bin files produced by the sequencer.This data makes the pipeline test fail when multiqc sav is incorporated to the
bcl_demultiplexsubworkflow.The long-term solution would be to find real paired-end data and replace the
test_pewith this data.Command used and terminal output
https://github.com/nf-core/demultiplex/pull/378Relevant files
https://github.com/nf-core/demultiplex/actions/runs/23069844909/job/67017363996
System information
No response