Sim-it not producing any long reads

[Oieswarya]

I am trying to simulate a set of HiFi reads 10x coverage of Pea Aphid genome. I am getting this in the error script:

rm: cannot remove `Sim-it-master/Output/PeaA/Long_reads_to_merge_PeaA_NW_021758228.1_Acyrthosiphon_pisum_isolate_AL4f_unplaced_genomic_scaffold,_pea_aphid_22Mar2018_4r6ur_Scaffold_10000': No such file or directory

rm: cannot remove `Sim-it-master/Output/PeaA/Long_reads_to_merge_PeaA_NW_021758229.1_Acyrthosiphon_pisum_isolate_AL4f_unplaced_genomic_scaffold,_pea_aphid_22Mar2018_4r6ur_Scaffold_10001': No such file or directory

rm: cannot remove `Sim-it-master/Output/PeaA/Long_reads_to_merge_PeaA_NW_021758230.1_Acyrthosiphon_pisum_isolate_AL4f_unplaced_genomic_scaffold,_pea_aphid_22Mar2018_4r6ur_Scaffold_10002': No such file or directory

Can you please help me.

This is my config.txt:

Project:

Project name = PeaA
Reference sequence = PeaAphid_Genome.fa
Replace ambiguous nts(N) =
Max threads = 16

Structural variation:

VCF input =
Foreign sequences =

Deletions = 0
Length (bp) = 30-150000

Insertions = 0
Length (bp) = 30-100000

Tandem duplications = 0
Length (bp) = 50-10000
Copies = 1-20

Inversions = 0
Length (bp) = 150-1300000

Complex substitutions = 0
Length (bp) = 30-100000

Inverted duplications = 0
Length (bp) = 150-350000

Heterozygosity = 60%

Long Read simulation:

Sequencing depth = 10
Median length = 10000
Length range = 10000-15000
Accuracy = 99.9%
Error profile = error_profile_PB_Sequel_CCS_hifi.txt

This is my job script to run:
perl Sim-it1.3.4.pl -c t_config.txt -o Sim-it-master/Output/PeaA/

[ndierckx]

Sorry for the late response
It is probably too late now, but I uploaded a new version that should have resolved your problem.
The read ids of your assembly file were too long to be used as a file name