Dear @ndierckx ,
I am trying to simulate translocations with Drosophila melanogaster genome. The reference genome is downloaded from NCBI (GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.) Based on previous issue, simulation of TRA can only introduced by an vcf file. Thus, I created a sample as the following.
`
#CHR POS SVLENGTH TYPE VARHAP SEQ
3L:2L . 5400 TRA 0/1
`
However, Sim-it returned an error message
I have confirmed that the chromosome names are correct. May I know the solution? Thank you!
Dear @ndierckx ,
I am trying to simulate translocations with Drosophila melanogaster genome. The reference genome is downloaded from NCBI (GCF_000001215.4_Release_6_plus_ISO1_MT_genomic.fna.) Based on previous issue, simulation of TRA can only introduced by an vcf file. Thus, I created a sample as the following.
`
#CHR POS SVLENGTH TYPE VARHAP SEQ
3L:2L . 5400 TRA 0/1
`
However, Sim-it returned an error message
I have confirmed that the chromosome names are correct. May I know the solution? Thank you!