I'm using the conda 0.5 version of the program and get this error part way through the run:
Please give the full output path that starts and end with a directory separator (/ or ): , Inappropriate ioctl for device
The initial content of the log file is shown below and clearly indicates that I have specified a complete path for the output and the TMP files.
Input parameters from the configuration file: *** Verify if everything is correct ***
Project:
Project name = Gela24
Assembly length =
Save assembled reads = no
Seed Input =
Genome size =
Ploidy = 2
Circular = no
Threads = 10
Output path = /z/home/paha/obscuro/Gela24/ONT/novoloci/output/
TMP path = /z/home/paha/obscuro/Gela24/ONT/novoloci/
Nanopore reads:
Nanopore reads = /z/home/paha/obscuro/Gela24/ONT/dechat.ec.fa
Local DB and NP reads =
Sequencing depth NP = 50
R10 = yes
Min read length NP = 3000
PacBio reads:
PacBio reads =
Local DB and PB reads =
Sequencing depth PB =
Min read length PB =
The program is obviously writing to the output folder when creating the database, but then I get the obscure error message.
Building local databases for the Nanopore reads......OK
Nanopore reads
Total count : 160053
Total length : 2569237104 bp
N50 : 19331 bp
Average read length : 16052 bp
Max read length : 146215 bp
Min read length : 5875 bp
Reads below min length : 0
Total removed bp : 0 bp
I'm using the conda 0.5 version of the program and get this error part way through the run:
Please give the full output path that starts and end with a directory separator (/ or ): , Inappropriate ioctl for device
The initial content of the log file is shown below and clearly indicates that I have specified a complete path for the output and the TMP files.
Input parameters from the configuration file: *** Verify if everything is correct ***
Project:
Project name = Gela24
Assembly length =
Save assembled reads = no
Seed Input =
Genome size =
Ploidy = 2
Circular = no
Threads = 10
Output path = /z/home/paha/obscuro/Gela24/ONT/novoloci/output/
TMP path = /z/home/paha/obscuro/Gela24/ONT/novoloci/
Nanopore reads:
Nanopore reads = /z/home/paha/obscuro/Gela24/ONT/dechat.ec.fa
Local DB and NP reads =
Sequencing depth NP = 50
R10 = yes
Min read length NP = 3000
PacBio reads:
PacBio reads =
Local DB and PB reads =
Sequencing depth PB =
Min read length PB =
The program is obviously writing to the output folder when creating the database, but then I get the obscure error message.
Building local databases for the Nanopore reads......OK
Nanopore reads
Total count : 160053
Total length : 2569237104 bp
N50 : 19331 bp
Average read length : 16052 bp
Max read length : 146215 bp
Min read length : 5875 bp
Reads below min length : 0
Total removed bp : 0 bp