From 8666e76859d4e067dacefcf54e04b673197888e7 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:10 -0600 Subject: [PATCH 01/10] Update click from 6.7 to 7.0 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 161185b..f6f711c 100644 --- a/requirements.txt +++ b/requirements.txt @@ -6,7 +6,7 @@ # biopython==1.72 click-plugins==1.0.3 -click==6.7 +click==7.0 coverage==4.5.1 cycler==0.10.0 # via matplotlib kiwisolver==1.0.1 # via matplotlib From d8a31c3b8a5ce0a8a16dab2a76f92663fe5b2974 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:11 -0600 Subject: [PATCH 02/10] Update pyparsing from 2.2.1 to 2.2.2 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index f6f711c..3248ef2 100644 --- a/requirements.txt +++ b/requirements.txt @@ -14,7 +14,7 @@ matplotlib==3.0.0 numpy==1.15.2 pandas==0.23.4 pyfaidx==0.5.4.2 -pyparsing==2.2.1 # via matplotlib +pyparsing==2.2.2 # via matplotlib python-dateutil==2.7.3 # via matplotlib, pandas pytz==2018.5 # via matplotlib, pandas pyyaml==3.13 From a6993fcc48b93a1160240520136e8d0ca7be558b Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:13 -0600 Subject: [PATCH 03/10] Pin biopython to latest version 1.71 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 8f7e0f4..2d134b0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -45,7 +45,7 @@ zip_safe = False include_package_data = True packages = aakbar install_requires = - biopython + biopython==1.71 click>=5.0 click_plugins coverage From 680ee371b2cdf3cff3f7233921e52e330c23af0a Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:14 -0600 Subject: [PATCH 04/10] Pin click_plugins to latest version 1.0.3 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 2d134b0..72cede0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -47,7 +47,7 @@ packages = aakbar install_requires = biopython==1.71 click>=5.0 - click_plugins + click_plugins==1.0.3 coverage matplotlib numpy From 30cc336333a520e879d121ed342cf2a2f6e85ca3 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:15 -0600 Subject: [PATCH 05/10] Pin coverage to latest version 4.5.1 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 72cede0..45d8453 100644 --- a/setup.cfg +++ b/setup.cfg @@ -48,7 +48,7 @@ install_requires = biopython==1.71 click>=5.0 click_plugins==1.0.3 - coverage + coverage==4.5.1 matplotlib numpy pandas From 7c3830856ed886a94fb572bc4c5f1684f05cda4e Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:17 -0600 Subject: [PATCH 06/10] Pin matplotlib to latest version 3.0.0 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 45d8453..ae10034 100644 --- a/setup.cfg +++ b/setup.cfg @@ -49,7 +49,7 @@ install_requires = click>=5.0 click_plugins==1.0.3 coverage==4.5.1 - matplotlib + matplotlib==3.0.0 numpy pandas pyfaidx From e3e121146b319dbf06125dc90387a5bba37b15c8 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:18 -0600 Subject: [PATCH 07/10] Pin numpy to latest version 1.15.2 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index ae10034..d23457b 100644 --- a/setup.cfg +++ b/setup.cfg @@ -50,7 +50,7 @@ install_requires = click_plugins==1.0.3 coverage==4.5.1 matplotlib==3.0.0 - numpy + numpy==1.15.2 pandas pyfaidx pyyaml From ee73c4081f61a3c93ee0cb952d19378601504497 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:20 -0600 Subject: [PATCH 08/10] Pin pandas to latest version 0.23.4 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index d23457b..37ec93c 100644 --- a/setup.cfg +++ b/setup.cfg @@ -51,7 +51,7 @@ install_requires = coverage==4.5.1 matplotlib==3.0.0 numpy==1.15.2 - pandas + pandas==0.23.4 pyfaidx pyyaml From a07e46035478e1282a7ca3da11fc8b3d5225a775 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:21 -0600 Subject: [PATCH 09/10] Pin pyfaidx to latest version 0.5.4.2 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 37ec93c..962de74 100644 --- a/setup.cfg +++ b/setup.cfg @@ -52,7 +52,7 @@ install_requires = matplotlib==3.0.0 numpy==1.15.2 pandas==0.23.4 - pyfaidx + pyfaidx==0.5.4.2 pyyaml [options.package_data] From 2ed7d9813dae10f74d62af583c4c1b09be225c90 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 1 Oct 2018 10:47:23 -0600 Subject: [PATCH 10/10] Pin pyyaml to latest version 3.13 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 962de74..ad13a1c 100644 --- a/setup.cfg +++ b/setup.cfg @@ -53,7 +53,7 @@ install_requires = numpy==1.15.2 pandas==0.23.4 pyfaidx==0.5.4.2 - pyyaml + pyyaml==3.13 [options.package_data] * =