From 409c8d4e35cb5e7cbab6a97878df3a1a1f7401e3 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:09 -0600 Subject: [PATCH 01/11] Update matplotlib from 2.2.3 to 3.0.0 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index db930ef..eee93cd 100644 --- a/requirements.txt +++ b/requirements.txt @@ -10,7 +10,7 @@ click==6.7 coverage==4.5.1 cycler==0.10.0 # via matplotlib kiwisolver==1.0.1 # via matplotlib -matplotlib==2.2.3 +matplotlib==3.0.0 numpy==1.15.1 pandas==0.23.4 pyfaidx==0.5.4.2 From d005ba8180b45cb2a54aff9331cbbb4da798e785 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:10 -0600 Subject: [PATCH 02/11] Update numpy from 1.15.1 to 1.15.2 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index eee93cd..c439f91 100644 --- a/requirements.txt +++ b/requirements.txt @@ -11,7 +11,7 @@ coverage==4.5.1 cycler==0.10.0 # via matplotlib kiwisolver==1.0.1 # via matplotlib matplotlib==3.0.0 -numpy==1.15.1 +numpy==1.15.2 pandas==0.23.4 pyfaidx==0.5.4.2 pyparsing==2.2.0 # via matplotlib From c5786119e04cf8fed19aefdef0119c3a59509208 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:12 -0600 Subject: [PATCH 03/11] Update pyparsing from 2.2.0 to 2.2.1 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index c439f91..161185b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -14,7 +14,7 @@ matplotlib==3.0.0 numpy==1.15.2 pandas==0.23.4 pyfaidx==0.5.4.2 -pyparsing==2.2.0 # via matplotlib +pyparsing==2.2.1 # via matplotlib python-dateutil==2.7.3 # via matplotlib, pandas pytz==2018.5 # via matplotlib, pandas pyyaml==3.13 From 0f5e71d2225f1a81bf0bafe690f6762d902718b4 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:13 -0600 Subject: [PATCH 04/11] Pin biopython to latest version 1.71 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 8f7e0f4..2d134b0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -45,7 +45,7 @@ zip_safe = False include_package_data = True packages = aakbar install_requires = - biopython + biopython==1.71 click>=5.0 click_plugins coverage From 4fdb6964c52d4df449cd8c0581ae0d210b556f66 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:15 -0600 Subject: [PATCH 05/11] Pin click_plugins to latest version 1.0.3 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 2d134b0..72cede0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -47,7 +47,7 @@ packages = aakbar install_requires = biopython==1.71 click>=5.0 - click_plugins + click_plugins==1.0.3 coverage matplotlib numpy From 11e82b2a82693233df7363563973db07a1ce54bc Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:16 -0600 Subject: [PATCH 06/11] Pin coverage to latest version 4.5.1 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 72cede0..45d8453 100644 --- a/setup.cfg +++ b/setup.cfg @@ -48,7 +48,7 @@ install_requires = biopython==1.71 click>=5.0 click_plugins==1.0.3 - coverage + coverage==4.5.1 matplotlib numpy pandas From d78d6258fdb8b00ec81956b35b7e1d24b1048ec1 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:18 -0600 Subject: [PATCH 07/11] Pin matplotlib to latest version 3.0.0 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 45d8453..ae10034 100644 --- a/setup.cfg +++ b/setup.cfg @@ -49,7 +49,7 @@ install_requires = click>=5.0 click_plugins==1.0.3 coverage==4.5.1 - matplotlib + matplotlib==3.0.0 numpy pandas pyfaidx From 183487f763ef8546fa02108d3c11060b38319a8b Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:19 -0600 Subject: [PATCH 08/11] Pin numpy to latest version 1.15.2 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index ae10034..d23457b 100644 --- a/setup.cfg +++ b/setup.cfg @@ -50,7 +50,7 @@ install_requires = click_plugins==1.0.3 coverage==4.5.1 matplotlib==3.0.0 - numpy + numpy==1.15.2 pandas pyfaidx pyyaml From 28496bb4badaf4a4908c48ddacd1a9c3f469df28 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:21 -0600 Subject: [PATCH 09/11] Pin pandas to latest version 0.23.4 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index d23457b..37ec93c 100644 --- a/setup.cfg +++ b/setup.cfg @@ -51,7 +51,7 @@ install_requires = coverage==4.5.1 matplotlib==3.0.0 numpy==1.15.2 - pandas + pandas==0.23.4 pyfaidx pyyaml From 074df1892806594db4ceb4abcadd16916f77c4f2 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:22 -0600 Subject: [PATCH 10/11] Pin pyfaidx to latest version 0.5.4.2 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 37ec93c..962de74 100644 --- a/setup.cfg +++ b/setup.cfg @@ -52,7 +52,7 @@ install_requires = matplotlib==3.0.0 numpy==1.15.2 pandas==0.23.4 - pyfaidx + pyfaidx==0.5.4.2 pyyaml [options.package_data] From 2e9f03c43756a65950a1688483e35640eafcd938 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 24 Sep 2018 10:44:24 -0600 Subject: [PATCH 11/11] Pin pyyaml to latest version 3.13 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 962de74..ad13a1c 100644 --- a/setup.cfg +++ b/setup.cfg @@ -53,7 +53,7 @@ install_requires = numpy==1.15.2 pandas==0.23.4 pyfaidx==0.5.4.2 - pyyaml + pyyaml==3.13 [options.package_data] * =