From e651716e555e5e41846786c8d368a9087f4ee75e Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:07 -0600 Subject: [PATCH 1/8] Pin biopython to latest version 1.71 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 8f7e0f4..2d134b0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -45,7 +45,7 @@ zip_safe = False include_package_data = True packages = aakbar install_requires = - biopython + biopython==1.71 click>=5.0 click_plugins coverage From 67eff6272577c5add8d1eca4590029b551a22912 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:08 -0600 Subject: [PATCH 2/8] Pin click_plugins to latest version 1.0.3 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 2d134b0..72cede0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -47,7 +47,7 @@ packages = aakbar install_requires = biopython==1.71 click>=5.0 - click_plugins + click_plugins==1.0.3 coverage matplotlib numpy From 24bf5c28ae62523302950b62ec1e814a53d1dc13 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:10 -0600 Subject: [PATCH 3/8] Pin coverage to latest version 4.5.1 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 72cede0..45d8453 100644 --- a/setup.cfg +++ b/setup.cfg @@ -48,7 +48,7 @@ install_requires = biopython==1.71 click>=5.0 click_plugins==1.0.3 - coverage + coverage==4.5.1 matplotlib numpy pandas From 79f02c64cdd60ec9c903cf228bdcb4e32f36ce0c Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:12 -0600 Subject: [PATCH 4/8] Pin matplotlib to latest version 2.2.3 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 45d8453..6cb1b45 100644 --- a/setup.cfg +++ b/setup.cfg @@ -49,7 +49,7 @@ install_requires = click>=5.0 click_plugins==1.0.3 coverage==4.5.1 - matplotlib + matplotlib==2.2.3 numpy pandas pyfaidx From b3cbb2f3283e7308f87481d90a41f1ff72f4e978 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:13 -0600 Subject: [PATCH 5/8] Pin numpy to latest version 1.15.1 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 6cb1b45..f76a205 100644 --- a/setup.cfg +++ b/setup.cfg @@ -50,7 +50,7 @@ install_requires = click_plugins==1.0.3 coverage==4.5.1 matplotlib==2.2.3 - numpy + numpy==1.15.1 pandas pyfaidx pyyaml From 399794c5712e70b94825966ab359feae56433e03 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:15 -0600 Subject: [PATCH 6/8] Pin pandas to latest version 0.23.4 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index f76a205..58d53e0 100644 --- a/setup.cfg +++ b/setup.cfg @@ -51,7 +51,7 @@ install_requires = coverage==4.5.1 matplotlib==2.2.3 numpy==1.15.1 - pandas + pandas==0.23.4 pyfaidx pyyaml From 17de5962b6c6ff684be019b468931c8a8c523b82 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:16 -0600 Subject: [PATCH 7/8] Pin pyfaidx to latest version 0.5.4.2 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 58d53e0..05e6986 100644 --- a/setup.cfg +++ b/setup.cfg @@ -52,7 +52,7 @@ install_requires = matplotlib==2.2.3 numpy==1.15.1 pandas==0.23.4 - pyfaidx + pyfaidx==0.5.4.2 pyyaml [options.package_data] From f445f3f3d2e23b054727952945991ecec6793686 Mon Sep 17 00:00:00 2001 From: pyup-bot Date: Mon, 17 Sep 2018 10:42:18 -0600 Subject: [PATCH 8/8] Pin pyyaml to latest version 3.13 --- setup.cfg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.cfg b/setup.cfg index 05e6986..92bbce5 100644 --- a/setup.cfg +++ b/setup.cfg @@ -53,7 +53,7 @@ install_requires = numpy==1.15.1 pandas==0.23.4 pyfaidx==0.5.4.2 - pyyaml + pyyaml==3.13 [options.package_data] * =