From 672ef92b35ef7c70df3452d5dccc028baf4104bf Mon Sep 17 00:00:00 2001
From: mvthuy278 <132281008+mvthuy278@users.noreply.github.com>
Date: Thu, 22 May 2025 15:16:28 +0700
Subject: [PATCH 1/2] Update config.yaml

---
 config/config.yaml | 17 +++++++++++++++++
 1 file changed, 17 insertions(+)

diff --git a/config/config.yaml b/config/config.yaml
index 20f40ce..8c652ca 100644
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -745,6 +745,23 @@ variant-calls:
       filename: NA12878_200M.haplotypecaller.filtered.vcf.gz
     benchmark: giab-NA12878-agilent-200M
     rename-contigs: true
+  deep-variant-NA12878-200M-agilent:
+    labels:
+      site: ioit
+      pipeline: deepvariant
+      trimming: bwa
+      read-mapping: bwa
+      base-quality-recalibration: gatk4
+      realignment: none
+      variant-detection: deepvariant
+      genotyping: none
+      reads: 200M
+    subcategory: NA12878
+    zenodo:
+      deposition: 15481998
+      filename: A006850052_NA12878_75M_BWA.DV.g.vcf
+    benchmark: giab-NA12878-agilent-200M
+    rename-contigs: true
 custom-benchmarks:
   giab-NA12878-agilent-200M:
     zenodo:

From 0b2a70fedaa5a18371273934b2f3fea6b532fa3a Mon Sep 17 00:00:00 2001
From: mvthuy278 <132281008+mvthuy278@users.noreply.github.com>
Date: Thu, 22 May 2025 15:45:11 +0700
Subject: [PATCH 2/2] Update config.yaml

---
 config/config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/config/config.yaml b/config/config.yaml
index 8c652ca..0f90f7c 100644
--- a/config/config.yaml
+++ b/config/config.yaml
@@ -758,8 +758,8 @@ variant-calls:
       reads: 200M
     subcategory: NA12878
     zenodo:
-      deposition: 15481998
-      filename: A006850052_NA12878_75M_BWA.DV.g.vcf
+      deposition: 15487705
+      filename: A006850052_NA12878_200M_BWA_DV_STANDART.vcf
     benchmark: giab-NA12878-agilent-200M
     rename-contigs: true
 custom-benchmarks: