diff --git a/.gitattributes b/.gitattributes
new file mode 100644
index 0000000..6db4cc3
--- /dev/null
+++ b/.gitattributes
@@ -0,0 +1,5 @@
+# Ensure shell scripts always use LF line endings
+*.sh text eol=lf
+
+# Dockerfile should also use LF
+Dockerfile text eol=lf
diff --git a/Dockerfile b/Dockerfile
index 4038575..0d0f5ad 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -7,8 +7,7 @@ RUN apk update && apk add --no-cache \
build-base \
nodejs-lts \
npm \
- hdf5-dev \
- netcdf-dev
+ hdf5-dev
# Set working directory
WORKDIR /app
diff --git a/README.md b/README.md
index 387b7ed..fc14829 100644
--- a/README.md
+++ b/README.md
@@ -49,7 +49,6 @@
-
## About The Project
NetCDF Explorer (netex) is a web application that allows users to upload and analyze NetCDF3 and NetCDF4 files. It
@@ -58,23 +57,34 @@ provides a simple interface for viewing file metadata and structure using xarray
Key features:
* Upload and view NetCDF file summaries including dimensions, coordinates, and variables
-
(back to top )
-
-
+
### Built With
* [![Python][Python-badge]][Python-url]
* [![Flask][Flask-badge]][Flask-url]
+* [![Xarray][Xarray-badge]][Xarray-url]
* [![MinIO][MinIO-badge]][MinIO-url]
* [![Tailwind CSS][Tailwind-badge]][Tailwind-url]
* [![Docker][Docker-badge]][Docker-url]
+
+
+### NetCDF Engines
+
+NetCDF Explorer uses [xarray](https://xarray.dev/) to read uploaded files. Since files are streamed from MinIO into memory,
+xarray selects a backend engine that supports reading from in-memory buffers. The engine is chosen automatically at runtime
+based on the file format:
+
+| File Format | Engine | Notes |
+|-------------|--------|-------|
+| NetCDF3 (classic) | `scipy` | Handles classic and 64-bit offset NetCDF formats |
+| NetCDF4 / HDF5 | `h5netcdf` | Reads HDF5-based NetCDF4 files via `h5py` |
+
(back to top )
-
## Getting Started
To get a local copy up and running, follow these steps.
@@ -254,13 +264,15 @@ Project Link: [https://github.com/mversaggi/netcdf-explorer](https://github.com/
+[Docker-badge]: https://img.shields.io/badge/Docker-2496ED?style=for-the-badge&logo=docker&logoColor=white
+[Docker-url]: https://www.docker.com/
[Flask-badge]: https://img.shields.io/badge/Flask-000000?style=for-the-badge&logo=flask&logoColor=white
[Flask-url]: https://flask.palletsprojects.com/
-[Python-badge]: https://img.shields.io/badge/Python-3776AB?style=for-the-badge&logo=python&logoColor=white
-[Python-url]: https://www.python.org/
[MinIO-badge]: https://img.shields.io/badge/MinIO-C72E49?style=for-the-badge&logo=minio&logoColor=white
[MinIO-url]: https://min.io/
+[Python-badge]: https://img.shields.io/badge/Python-3776AB?style=for-the-badge&logo=python&logoColor=white
+[Python-url]: https://www.python.org/
[Tailwind-badge]: https://img.shields.io/badge/Tailwind_CSS-38B2AC?style=for-the-badge&logo=tailwind-css&logoColor=white
[Tailwind-url]: https://tailwindcss.com/
-[Docker-badge]: https://img.shields.io/badge/Docker-2496ED?style=for-the-badge&logo=docker&logoColor=white
-[Docker-url]: https://www.docker.com/
+[Xarray-badge]: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/pydata/xarray/refs/heads/main/doc/badge.json&style=for-the-badge
+[Xarray-url]: https://xarray.dev/
diff --git a/compose.yaml b/compose.yaml
index bbe1f10..85125bc 100644
--- a/compose.yaml
+++ b/compose.yaml
@@ -44,6 +44,11 @@ services:
depends_on:
minio:
condition: service_healthy
+ # TODO: Remove prior to release
+ # Bind mounts for local development (change source without rebuilding)
+# volumes:
+# - ./src:/app/src
+# - ./templates:/app/templates
networks:
- netcdf-network
restart: unless-stopped
diff --git a/pyproject.toml b/pyproject.toml
index 59b4c9b..ecae067 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -8,9 +8,10 @@ dependencies = [
"black==25.12.0",
"coverage==7.9.1",
"flask==3.1.0",
+ "h5netcdf==1.8.1",
+ "h5py==3.13.0",
"humanize==4.12.3",
"minio==7.2.20",
- "netcdf4==1.7.2",
"path==17.1.1",
"pytest==8.4.2",
"pytest-env==1.2.0",
diff --git a/requirements.txt b/requirements.txt
index 6ffd08c..c477bb5 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,8 +1,9 @@
# Production Dependencies
flask==3.1.0
humanize==4.12.3
+h5netcdf==1.8.1
+h5py==3.13.0
minio==7.2.20
-netCDF4==1.7.2
path==17.1.1
scipy==1.15.3
toml==0.10.2
diff --git a/src/netex/routes.py b/src/netex/routes.py
index 66dfd7f..5970d27 100644
--- a/src/netex/routes.py
+++ b/src/netex/routes.py
@@ -12,7 +12,9 @@
request,
url_for,
)
+from minio import Minio
from minio.error import S3Error
+from xarray import Dataset
from netex.app import NETCDF_BUCKET_NAME
@@ -59,7 +61,8 @@ def summary(netcdf_filename):
# Retrieve file from object store
response = None
try:
- response = current_app.object_store_client.get_object(
+ object_store_client: Minio = current_app.object_store_client
+ response = object_store_client.get_object(
bucket_name=NETCDF_BUCKET_NAME,
object_name=netcdf_filename,
)
@@ -87,3 +90,8 @@ def summary(netcdf_filename):
file_size=humanize.naturalsize(file_size),
summary=summary_html,
)
+
+
+@app_blueprint.get("/map")
+def map_view():
+ return render_template("map.html.jinja", heatmap_data=None)
diff --git a/templates/map.html.jinja b/templates/map.html.jinja
new file mode 100644
index 0000000..fe09b28
--- /dev/null
+++ b/templates/map.html.jinja
@@ -0,0 +1,196 @@
+
+
+
+ NetCDF Explorer
+
+
+
+
+
+
+
+
+
+
+
+ Back to Explorer
+
+
+
+
+
diff --git a/uv.lock b/uv.lock
index 116d0c8..5f70d84 100644
--- a/uv.lock
+++ b/uv.lock
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]
-[[package]]
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-version = "1.6.5"
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name = "netex"
version = "0.1.0"
@@ -775,9 +725,10 @@ dependencies = [
{ name = "black" },
{ name = "coverage" },
{ name = "flask" },
+ { name = "h5netcdf" },
+ { name = "h5py" },
{ name = "humanize" },
{ name = "minio" },
- { name = "netcdf4" },
{ name = "path" },
{ name = "pytest" },
{ name = "pytest-env" },
@@ -800,9 +751,10 @@ requires-dist = [
{ name = "black", specifier = "==25.12.0" },
{ name = "coverage", specifier = "==7.9.1" },
{ name = "flask", specifier = "==3.1.0" },
+ { name = "h5netcdf", specifier = "==1.8.1" },
+ { name = "h5py", specifier = "==3.13.0" },
{ name = "humanize", specifier = "==4.12.3" },
{ name = "minio", specifier = "==7.2.20" },
- { name = "netcdf4", specifier = "==1.7.2" },
{ name = "path", specifier = "==17.1.1" },
{ name = "pytest", specifier = "==8.4.2" },
{ name = "pytest-env", specifier = "==1.2.0" },