multiplicity/NAMESPACE at main · mskilab-org/multiplicity · GitHub

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# Generated by roxygen2: do not edit by hand

export(multiplicity)
export(parsesnpeff)
export(plot_multiplicity_cn_density)
export(plot_multiplicity_cn_vs_segment)
export(plot_multiplicity_gtrack)
export(plot_multiplicity_histogram)
export(plot_vaf_cn_scatter)
export(snvplicity)
export(transform_hets)
export(transform_snv)
import(GenomicRanges)
import(VariantAnnotation)
import(data.table)
import(gGnome)
import(gTrack)
import(gUtils)
import(ggplot2)
importFrom(khtools,coalesce)
importFrom(khtools,grok_vcf)
importFrom(magrittr,"%>%")
importFrom(pals,glasbey)
importMethodsFrom(GenomeInfoDb,"seqlengths<-")
importMethodsFrom(GenomeInfoDb,"seqlevels<-")
importMethodsFrom(GenomeInfoDb,"seqnames<-")
importMethodsFrom(GenomeInfoDb,seqlengths)
importMethodsFrom(GenomeInfoDb,seqlevels)
importMethodsFrom(GenomeInfoDb,seqnames)
importMethodsFrom(MatrixGenerics,rowRanges)
importMethodsFrom(S4Vectors,"mcols<-")
importMethodsFrom(S4Vectors,"values<-")
importMethodsFrom(S4Vectors,mcols)
importMethodsFrom(S4Vectors,values)