unable to load WGS rds object

[Sumithrasank]

Hi,
I am trying to use fishHook on WGS data and was trying out the analysis mentioned in the tutorial. I was able to install fishHook but when I tried to read in the mutations via
mutations.wgs = readRDS("/gpfs/commons/groups/imielinski_lab/projects/FishHook/CurrentProtocols/db/de_identified_LUAD_mutations.rds")
I get the following error
Error in gzfile(file, "rb") : cannot open the connection
In addition: Warning message:
In gzfile(file, "rb") :
cannot open compressed file '/gpfs/commons/groups/imielinski_lab/projects/FishHook/CurrentProtocols/db/de_identified_LUAD_mutations.rds', probable reason 'No such file or directory'
Could you please help me with this error? Thanks.

[mskilab]

HI sorry - indeed we need to post these to a URL. In the meantime you can swap in your own somatic mutations converted to GRanges from maf or vcf. They will look just like the exome mutations Marcin

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On Fri, Jul 23, 2021 at 10:54 AM Sumithrasank ***@***.***> wrote: Hi, I am trying to use fishHook on WGS data and was trying out the analysis mentioned in the tutorial. I was able to install fishHook but when I tried to read in the mutations via mutations.wgs = readRDS("/gpfs/commons/groups/imielinski_lab/projects/FishHook/CurrentProtocols/db/de_identified_LUAD_mutations.rds") I get the following error Error in gzfile(file, "rb") : cannot open the connection In addition: Warning message: In gzfile(file, "rb") : cannot open compressed file '/gpfs/commons/groups/imielinski_lab/projects/FishHook/CurrentProtocols/db/de_identified_LUAD_mutations.rds', probable reason 'No such file or directory' Could you please help me with this error? Thanks. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#15>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AC73JEPTVP6TJVMXU7UHN2LTZF7DFANCNFSM5A4E65HA> .

[Sumithrasank]

Thank you.