Planned features

[mschubert]

Workflow

• Interface to load from nf-core: sarek, rnaseq, rnafusion included in results sync
• Tests
• CI

Variants

• Adding germline variant information
• Phasing based on read information, or all possible

Transcripts

• Option to filter transcripts/exons by expression, not only genes
• If multiple transcripts with same context, select canonical if available
• If multiple transcripts with same context, select highest expressed
• Be able to use EnsDb instead of Txdb objects for transcript info

Peptides

• Do not remove duplicate reference peptide (or do?)
• Better solution for computational complexity in remove_cutsite (check M14TIL2)

Misc

• Excel report export with adjusted cell width