Error in consensus_info(trees, mode == 1L, p = safeP) : Not a matrix.
12. stop(structure(list(message = "Not a matrix.", call = consensus_info(trees,
mode == 1L, p = safeP), cppstack = NULL), class = c("Rcpp::not_a_matrix",
"C++Error", "error", "condition")))
11. consensus_info(trees, mode == 1L, p = safeP)
10. ConsensusInfo(dropForest, info = info, p = p, check.tips = FALSE)
9. FUN(newX[, i], ...)
8. apply(drops, 2, function(drop) {
cli_progress_update(1, .envir = parent.frame(2), status = paste0("Drop ",
startTip - NTip(trees[[1]]), " leaves = ", signif(best),
" bits.")) ...
7. .Drop(i)
6. Roguehalla(trees, dropsetSize = dropsetSize, info = "clust",
p = p, neverDrop = neverDrop)
5. RogueTaxa(trees = trees, dropsetSize = dropsetSize, info = info) at runtime.R#13
4. .Profile({
RogueTaxa(trees = trees, dropsetSize = dropsetSize, info = info)
}, "RogueTaxa") at runtime.R#13
3. .RogueProf(bsTrees, dropsetSize = 3, info = "scic")
2. rbind(q1prof = .Profile({
QuickRogue(bsTrees, info = "clu")
}, "QuickRogue"), c1Prof = if (h2) .RogueProf(bsTrees, dropsetSize = 1,
info = "scic") else noProf, c2Prof = if (h2) .RogueProf(bsTrees, ... at runtime.R#36
1. RunTime(fileI, h2 = nLeaves[1L + fileI] < 255)
# where fileI = 2
