diff --git a/tutorials/00-introduction/Manifest.toml b/tutorials/00-introduction/Manifest.toml index 38b21a4b2..19dd9e98c 100644 --- a/tutorials/00-introduction/Manifest.toml +++ b/tutorials/00-introduction/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "b45878f3df6dffef908d7ec87e98124988d559f6" +project_hash = "5097eee4071f4b20327e89245b64ad4882901e5d" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", 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= "SparseArrays" + SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" + +[[deps.SciMLPublic]] +git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.1" + +[[deps.SciMLStructures]] +deps = ["ArrayInterface", "PrecompileTools"] +git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.10.0" [[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +deps = ["InteractiveUtils"] +git-tree-sha1 = "e785eaa35a0f5518a388f9010e66fda64ea95ede" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" +version = "3.1.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.3.0" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = 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+ + [deps.SparseConnectivityTracer.extensions] + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" + SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" + SparseConnectivityTracerNNlibExt = "NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" + + [deps.SparseConnectivityTracer.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", 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"Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" 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+[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1625,10 +2124,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1650,30 +2149,21 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" +version = "1.11.0" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", 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"JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/01-gaussian-mixture-model/Manifest.toml b/tutorials/01-gaussian-mixture-model/Manifest.toml index 7e11ea98b..ca326bf14 100644 --- a/tutorials/01-gaussian-mixture-model/Manifest.toml +++ b/tutorials/01-gaussian-mixture-model/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "a0a3ca6aa1eb54296a719c0190365d414d855bc0" +project_hash = "99f872969d946c474c5093cf86956537aa291079" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = 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-git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = 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["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = 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+770,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.4+0" [[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" +version = "1.0.17+0" [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" @@ -608,56 +792,69 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" [[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] +git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.4.1+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.2.0" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.22" + + [deps.GR.extensions] + IJuliaExt = "IJulia" + + [deps.GR.weakdeps] + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -665,80 +862,87 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = 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git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -746,216 +950,202 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = 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"8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/02-logistic-regression/Manifest.toml b/tutorials/02-logistic-regression/Manifest.toml index 0485ee814..54d44c51d 100644 --- a/tutorials/02-logistic-regression/Manifest.toml +++ b/tutorials/02-logistic-regression/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "e25051313213ab9b94363dd6ade21d1145ab1ba1" +project_hash = "bfc7aade45a3b4c696fc96c66665c603a03b3471" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,62 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.1.2" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +268,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,130 +281,144 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "8d8e0b0f350b8e1c91420b5e64e5de774c2f0f4d" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.16" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +deps = ["Compat", "DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "73acb4ed51b1855e1b5ce5c610334363a98d13f1" uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" +version = "1.0.2" [deps.CategoricalArrays.extensions] + CategoricalArraysArrowExt = "Arrow" CategoricalArraysJSONExt = "JSON" CategoricalArraysRecipesBaseExt = "RecipesBase" CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStatsBaseExt = "StatsBase" CategoricalArraysStructTypesExt = "StructTypes" [deps.CategoricalArrays.weakdeps] + Arrow = "69666777-d1a9-59fb-9406-91d4454c9d45" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -311,31 +426,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +459,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +472,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -368,20 +483,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -389,21 +504,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.22" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -413,6 +528,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -443,11 +565,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -457,23 +629,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = 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"025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -713,22 +941,27 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" + +[[deps.HashArrayMappedTries]] +git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" +uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" +version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -736,63 +969,77 @@ uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.5" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" + +[[deps.IntegerMathUtils]] +git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.3" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "65d505fa4c0d7072990d659ef3fc086eb6da8208" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.16.2" + + [deps.Interpolations.extensions] + InterpolationsForwardDiffExt = "ForwardDiff" + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.13" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.1.17" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" +version = "1.3.1" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.6" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -800,116 +1047,114 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" +version = "1.4.0" + + [deps.JSON.extensions] + JSONArrowExt = ["ArrowTypes"] + + [deps.JSON.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.1.4+0" + +[[deps.JuliaSyntaxHighlighting]] +deps = ["StyledStrings"] +uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" +version = "1.12.0" [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] +git-tree-sha1 = "fb14a863240d62fbf5922bf9f8803d7df6c62dc8" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.40" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [deps.KernelAbstractions.weakdeps] EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] +git-tree-sha1 = "4260cfc991b8885bf747801fb60dd4503250e478" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.11" [[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "059aabebaa7c82ccb853dd4a0ee9d17796f7e1bc" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" +version = "3.100.3+0" [[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.3.0" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.26+0" +version = "4.0.1+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = 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"NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.23" + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" + SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] + + [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + JuMP = "4076af6c-e467-56ae-b986-b466b2749572" + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" +git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" +version = "2.7.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1632,37 +2163,49 @@ git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.4" + [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.17" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" +version = "1.8.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] @@ -1672,9 +2215,9 @@ version = "0.33.21" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1683,42 +2226,72 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" +git-tree-sha1 = "08786db4a1346d17d0a8d952d2e66fd00fa18192" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" +version = "0.7.9" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.8" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a3c1536470bf8c5e02096ad4853606d7c8f62721" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.2" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.7.2" +weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1727,9 +2300,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.5.0+2025b" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1744,10 +2317,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1769,40 +2342,31 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "d422301b2a1e294e3e4214061e44f338cafe18a2" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" +version = "1.22.2" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] TimeZonesRecipesBaseExt = "RecipesBase" -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1810,48 +2374,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1859,33 +2413,16 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] 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"JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = 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"2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/03-bayesian-neural-network/Manifest.toml b/tutorials/03-bayesian-neural-network/Manifest.toml index 57e2e897d..7c4892023 100644 --- a/tutorials/03-bayesian-neural-network/Manifest.toml +++ b/tutorials/03-bayesian-neural-network/Manifest.toml @@ -1,13 +1,19 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "7168816b9d483eadc3c00203d16ab269e5dc5bfd" +project_hash = "06a528f4f2b0a832715fa26306363adf50eaeadb" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +27,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,37 +123,65 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -114,42 +189,62 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.1.2" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -157,10 +252,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -168,100 +265,110 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -269,31 +376,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -302,7 +409,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -315,9 +422,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -326,14 +433,14 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.ContextVariablesX]] @@ -343,9 +450,9 @@ uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" version = "0.1.3" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -353,15 +460,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -371,6 +478,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -401,26 +515,78 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = 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-git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" +version = "4.7.2+0" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.41.3+0" + +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.6.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.12.0" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "f9a11237204bc137617194d79d813069838fcf61" +git-tree-sha1 = "d9625f27ded4ad726ceca7819394a4cc77ed25b3" uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.1" +version = "2.2.0" [[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "a0512ad65f849536b5a52e59b05c59c25cdad943" +deps = ["DocStringExtensions", "LogDensityProblems"] +git-tree-sha1 = "7b83f3ad0a8105f79a067cafbfd124827bb398d0" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.13.1" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface"] LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -990,7 +1223,9 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -1000,9 +1235,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.29" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1012,36 +1247,85 @@ weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = 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= "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.23" + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" + SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] + + [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CliqueTrees = 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[deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1660,10 +2271,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1685,30 +2296,21 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", 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"Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1716,48 +2318,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = 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"PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" +version = "0.7.10" [deps.Zygote.extensions] + ZygoteAtomExt = "Atom" ZygoteColorsExt = "Colors" ZygoteDistancesExt = "Distances" ZygoteTrackerExt = "Tracker" [deps.Zygote.weakdeps] + Atom = "c52e3926-4ff0-5f6e-af25-54175e0327b1" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = 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"371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/04-hidden-markov-model/Manifest.toml b/tutorials/04-hidden-markov-model/Manifest.toml index be8f1d5cc..80fc8a485 100644 --- a/tutorials/04-hidden-markov-model/Manifest.toml +++ b/tutorials/04-hidden-markov-model/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "22534c8a743be6cd79b588fb185e78dd8614a6d2" +project_hash = "df92bc89ec116d5dd2f3947e3a9525c71ea4d7d9" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + 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-git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = 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"Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = 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"JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/05-linear-regression/Manifest.toml b/tutorials/05-linear-regression/Manifest.toml index c72f859f0..354dd08ba 100644 --- a/tutorials/05-linear-regression/Manifest.toml +++ b/tutorials/05-linear-regression/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "9182614b755dc32fb5fc91ef98f1dbba04d8ffaf" +project_hash = "127bda7e7814e6eed4fca06f681aaee291efa67b" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,62 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.1.2" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +268,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,130 +281,144 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "8d8e0b0f350b8e1c91420b5e64e5de774c2f0f4d" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.16" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +deps = ["Compat", "DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "73acb4ed51b1855e1b5ce5c610334363a98d13f1" uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" +version = "1.0.2" [deps.CategoricalArrays.extensions] + CategoricalArraysArrowExt = "Arrow" CategoricalArraysJSONExt = "JSON" CategoricalArraysRecipesBaseExt = "RecipesBase" CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStatsBaseExt = "StatsBase" CategoricalArraysStructTypesExt = "StructTypes" [deps.CategoricalArrays.weakdeps] + Arrow = "69666777-d1a9-59fb-9406-91d4454c9d45" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -311,31 +426,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +459,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +472,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -368,14 +483,14 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.ContextVariablesX]] @@ -385,9 +500,9 @@ uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" version = "0.1.3" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -395,21 +510,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -419,6 +534,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -449,11 +571,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -463,23 +635,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -494,95 +668,102 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = 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["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -731,22 +959,27 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = 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"OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -754,63 +987,77 @@ uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.5" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" + + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" +[[deps.IntegerMathUtils]] +git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.3" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = 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git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -818,28 +1065,45 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = 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["BenchmarkTools", "ForwardDiff"] @@ -1043,7 +1292,9 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -1053,9 +1304,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.29" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -1065,36 +1316,37 @@ weakdeps = ["ChainRulesCore", 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["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.12.0" + +[[deps.SparseConnectivityTracer]] +deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "590b72143436e443888124aaf4026a636049e3f5" +uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" +version = "1.2.1" +weakdeps = ["ChainRulesCore", "LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"] + + [deps.SparseConnectivityTracer.extensions] + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" + SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" + SparseConnectivityTracerNNlibExt = "NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = 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"LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" +git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" +version = "2.7.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1665,49 +2206,61 @@ git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.4" + [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.17" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" +version = "1.8.0" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" +version = "0.34.10" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1716,42 +2269,72 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" +git-tree-sha1 = "08786db4a1346d17d0a8d952d2e66fd00fa18192" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" -version = "0.7.3" +version = "0.7.9" [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.8" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a3c1536470bf8c5e02096ad4853606d7c8f62721" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.2" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.7.2" +weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1760,9 +2343,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.5.0+2025b" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1777,10 +2360,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1802,40 +2385,31 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "d422301b2a1e294e3e4214061e44f338cafe18a2" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" +version = "1.22.2" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] TimeZonesRecipesBaseExt = "RecipesBase" -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1843,48 +2417,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", 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"5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/06-infinite-mixture-model/Manifest.toml b/tutorials/06-infinite-mixture-model/Manifest.toml index a3650ad1f..3066eed1f 100644 --- a/tutorials/06-infinite-mixture-model/Manifest.toml +++ b/tutorials/06-infinite-mixture-model/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "22d77437d5f9cc37590eb650c66a832d7f8185cb" +project_hash = "c0dcd24c9512ddf80a914430cb4b075e4bc66d94" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,37 +127,65 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -114,42 +193,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -157,10 +238,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -168,100 +251,110 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -269,31 +362,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -302,7 +395,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -315,9 +408,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -326,20 +419,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -347,15 +440,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -365,6 +458,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -395,26 +495,78 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = 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[[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1561,10 +2060,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] 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"Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/07-poisson-regression/Manifest.toml b/tutorials/07-poisson-regression/Manifest.toml index 4c986bc0a..da71749a7 100644 --- a/tutorials/07-poisson-regression/Manifest.toml +++ b/tutorials/07-poisson-regression/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "0517af877736a403423fea5e79af9a2622617f81" +project_hash = "f21f1a51d801c2858d912559c7ff2ea6ff9ce9ac" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = 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"f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,62 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.1.2" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +268,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,130 +281,144 @@ uuid = 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BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = 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[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = 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"a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -311,31 +426,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +459,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +472,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -368,20 +483,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -389,21 +504,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.22" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -413,6 +528,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -443,11 +565,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -457,23 +629,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = 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["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = 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["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" +version = "1.4.0" + + [deps.JSON.extensions] + JSONArrowExt = ["ArrowTypes"] + + [deps.JSON.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.1.4+0" + +[[deps.JuliaSyntaxHighlighting]] +deps = ["StyledStrings"] +uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" +version = "1.12.0" [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] +git-tree-sha1 = "fb14a863240d62fbf5922bf9f8803d7df6c62dc8" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.40" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [deps.KernelAbstractions.weakdeps] EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] +git-tree-sha1 = "4260cfc991b8885bf747801fb60dd4503250e478" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.11" [[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = 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SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1727,9 +2300,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.5.0+2025b" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1744,10 +2317,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1769,40 +2342,31 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "d422301b2a1e294e3e4214061e44f338cafe18a2" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" +version = "1.22.2" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] TimeZonesRecipesBaseExt = "RecipesBase" -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1810,48 +2374,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1859,33 +2413,16 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - [[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +git-tree-sha1 = 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git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" version = "1.6.1" -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.4+0" +version = "5.8.2+0" [[deps.Xorg_libICE_jll]] -deps = ["Libdl", "Pkg"] -git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a3ea76ee3f4facd7a64684f9af25310825ee3668" uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" +version = "1.1.2+0" [[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "9c7ad99c629a44f81e7799eb05ec2746abb5d588" uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" +version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" +version = "1.8.13+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = 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-git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "1a4a26870bf1e5d26cd585e38038d399d7e65706" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" +version = "1.3.8+0" [[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" +version = "6.0.2+0" [[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" uuid = 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"19560f30fd49f4d4efbe7002a1037f8c43d43b96" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" +version = "0.9.12+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/08-multinomial-logistic-regression/Manifest.toml b/tutorials/08-multinomial-logistic-regression/Manifest.toml index c55a16b30..fa6c1421e 100644 --- a/tutorials/08-multinomial-logistic-regression/Manifest.toml +++ b/tutorials/08-multinomial-logistic-regression/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "53f714f9c520703858bde7881fd306675a4a29d7" +project_hash = "0b3b4e18604c61fd11502b749e0a041e56a705ab" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,62 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.1.2" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +268,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,130 +281,144 @@ uuid = 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BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = 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"SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = 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"a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -311,31 +426,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,7 +459,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -357,9 +472,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -368,20 +483,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -389,21 +504,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.22" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -413,6 +528,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -443,11 +565,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -457,23 +629,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = 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["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = 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FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" +version = "2.17.1+0" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "1.3.2" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -628,15 +843,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" 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uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.4.1+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.2.0" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", 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"Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -707,22 +935,27 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", 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"996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.5.0" +version = "1.13.1" [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface"] LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1019,7 +1268,9 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -1029,9 +1280,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", 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SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.23" + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" + SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] + + [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CliqueTrees = 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+git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1710,9 +2283,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.5.0+2025b" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1727,10 +2300,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1752,40 +2325,31 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "d422301b2a1e294e3e4214061e44f338cafe18a2" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" +version = "1.22.2" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] TimeZonesRecipesBaseExt = "RecipesBase" -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1793,48 +2357,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = 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"609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1842,33 +2396,16 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - [[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" +version = "0.3.0" -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" + [deps.UnsafeAtomics.extensions] + UnsafeAtomicsLLVM = ["LLVM"] + + [deps.UnsafeAtomics.weakdeps] + LLVM = "929cbde3-209d-540e-8aea-75f648917ca0" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -1882,16 +2419,10 @@ uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" version = "1.3.243+0" [[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "96478df35bbc2f3e1e791bc7a3d0eeee559e60e9" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.24.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -1901,295 +2432,277 @@ version = "1.4.2" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +git-tree-sha1 = "e9aeb174f95385de31e70bd15fa066a505ea82b9" uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" +version = "0.6.7" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "248a7031b3da79a127f14e5dc5f417e26f9f6db7" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" +version = "1.1.0" [[deps.WorkerUtilities]] git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" version = "1.6.1" -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.11.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" - [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0" +git-tree-sha1 = 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uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/09-variational-inference/Manifest.toml b/tutorials/09-variational-inference/Manifest.toml index a8831e57e..21aa22938 100644 --- a/tutorials/09-variational-inference/Manifest.toml +++ b/tutorials/09-variational-inference/Manifest.toml @@ -1,13 +1,19 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "a797d593ed4ed55905ba6ad67df963533cfbc8d6" +project_hash = "9a08414722027505b0d0e729b2ce0d3facad5251" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +27,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +123,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +172,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +201,62 @@ 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[deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +264,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,130 +277,144 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = 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"ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = 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"0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -311,31 +422,36 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" + +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -344,18 +460,19 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.ComponentArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "3ee12062466a73b5f9c04113375e4934f174bc2c" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] +git-tree-sha1 = "0d1b8b3d556d70a29ad515325cd2f5f4ed703e09" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.3" +version = "0.15.32" [deps.ComponentArrays.extensions] - ComponentArraysAdaptExt = "Adapt" - ComponentArraysConstructionBaseExt = "ConstructionBase" ComponentArraysGPUArraysExt = "GPUArrays" + ComponentArraysKernelAbstractionsExt = "KernelAbstractions" + ComponentArraysOptimisersExt = "Optimisers" + ComponentArraysReactantExt = "Reactant" ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" ComponentArraysReverseDiffExt = "ReverseDiff" ComponentArraysSciMLBaseExt = "SciMLBase" @@ -363,9 +480,10 @@ version = "0.15.3" ComponentArraysZygoteExt = "Zygote" [deps.ComponentArrays.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" @@ -383,9 +501,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -394,14 +512,14 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.ContextVariablesX]] @@ -411,9 +529,9 @@ uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" version = "0.1.3" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -421,21 +539,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -445,6 +563,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -475,11 +600,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -489,23 +664,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -520,95 +697,112 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", 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["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = 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"Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -781,28 +1024,33 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" + +[[deps.HashArrayMappedTries]] +git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" +uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" +version = "0.2.0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.IRTools]] -deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "eac00994ce3229a464c2847e956d77a2c64ad3a5" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.10" +version = "0.4.15" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -815,63 +1063,77 @@ uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.5" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" + +[[deps.IntegerMathUtils]] +git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.3" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "65d505fa4c0d7072990d659ef3fc086eb6da8208" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.16.2" + + [deps.Interpolations.extensions] + InterpolationsForwardDiffExt = "ForwardDiff" + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.13" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.1.17" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" +version = "1.3.1" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.6" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -879,28 +1141,45 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" +version = "1.4.0" + + [deps.JSON.extensions] + JSONArrowExt = ["ArrowTypes"] + + [deps.JSON.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.1.4+0" + +[[deps.JuliaSyntaxHighlighting]] +deps = ["StyledStrings"] +uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" +version = "1.12.0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -909,192 +1188,173 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "5f1ecfddb6abde48563d08b2cc7e5116ebcd6c27" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] +git-tree-sha1 = "fb14a863240d62fbf5922bf9f8803d7df6c62dc8" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.10" +version = "0.9.40" +weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" - - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" +deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] +git-tree-sha1 = "4260cfc991b8885bf747801fb60dd4503250e478" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.7" +version = "0.6.11" 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"Unicode"] -git-tree-sha1 = "19e47a495dfb7240eb44dc6971d660f7e4244a72" +deps = ["CategoricalArrays", "CodecZlib", "DataAPI", "DataFrames", "Dates", "FileIO", "Requires", "TimeZones", "Unicode"] +git-tree-sha1 = "7d71a86313a7e2c6e4e21836c51c846a061e3735" uuid = "df47a6cb-8c03-5eed-afd8-b6050d6c41da" -version = "0.8.3" +version = "1.1.0" [[deps.RDatasets]] deps = ["CSV", "CodecZlib", "DataFrames", "FileIO", "Printf", "RData", "Reexport"] -git-tree-sha1 = "2720e6f6afb3e562ccb70a6b62f8f308ff810333" +git-tree-sha1 = "959a35b071feb3cb08760c7b0ad5d63e56e2b1ff" uuid = "ce6b1742-4840-55fa-b093-852dadbb1d8b" -version = "0.7.7" +version = "0.8.1" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = 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"SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.39.0" +version = "3.48.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1573,103 +2063,177 @@ version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +git-tree-sha1 = 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"Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.ShiftedArrays]] git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" @@ -1688,45 +2252,75 @@ uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" [[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" +version = "1.2.0" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" +version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" 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SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.23" + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" + SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] + + [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + JuMP = "4076af6c-e467-56ae-b986-b466b2749572" + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" +git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" +version = "2.7.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1738,17 +2332,23 @@ git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.4" + [[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = 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"Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.17" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" +version = "1.8.0" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" +version = "0.34.10" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1806,42 +2412,72 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsModels]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Printf", "REPL", "ShiftedArrays", "SparseArrays", "StatsAPI", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "5cf6c4583533ee38639f73b880f35fc85f2941e0" +git-tree-sha1 = "08786db4a1346d17d0a8d952d2e66fd00fa18192" uuid = 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SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1850,9 +2486,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.5.0+2025b" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -1867,10 +2503,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1892,40 +2528,31 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "d422301b2a1e294e3e4214061e44f338cafe18a2" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.13.0" +version = "1.22.2" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] TimeZonesRecipesBaseExt = "RecipesBase" -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" - [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1933,45 +2560,34 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -1980,6 +2596,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1987,33 +2604,16 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.3" - [[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" +version = "0.3.0" -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" + [deps.UnsafeAtomics.extensions] + UnsafeAtomicsLLVM = ["LLVM"] + + [deps.UnsafeAtomics.weakdeps] + LLVM = "929cbde3-209d-540e-8aea-75f648917ca0" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -2027,16 +2627,10 @@ uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" version = "1.3.243+0" [[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "96478df35bbc2f3e1e791bc7a3d0eeee559e60e9" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.24.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -2046,307 +2640,295 @@ version = "1.4.2" [[deps.Widgets]] deps = ["Colors", "Dates", "Observables", "OrderedCollections"] -git-tree-sha1 = "fcdae142c1cfc7d89de2d11e08721d0f2f86c98a" +git-tree-sha1 = "e9aeb174f95385de31e70bd15fa066a505ea82b9" uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" -version = "0.6.6" +version = "0.6.7" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "248a7031b3da79a127f14e5dc5f417e26f9f6db7" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = 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-git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a3ea76ee3f4facd7a64684f9af25310825ee3668" uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.0.10+1" +version = "1.1.2+0" [[deps.Xorg_libSM_jll]] -deps = ["Libdl", "Pkg", "Xorg_libICE_jll"] -git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "9c7ad99c629a44f81e7799eb05ec2746abb5d588" uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.3+0" +version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" +version = "1.8.13+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +git-tree-sha1 = "aa1261ebbac3ccc8d16558ae6799524c450ed16b" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" +version = "1.0.13+0" [[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "6c74ca84bbabc18c4547014765d194ff0b4dc9da" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" +version = "1.2.4+0" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +git-tree-sha1 = "52858d64353db33a56e13c341d7bf44cd0d7b309" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" +version = "1.1.6+0" [[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "1a4a26870bf1e5d26cd585e38038d399d7e65706" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" +version = "1.3.8+0" [[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" +version = "6.0.2+0" [[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" uuid = 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[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] 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+git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "16848c23e7961e099a4152ba0d10db887f412ee9" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" -weakdeps = ["Colors", "Distances", "Tracker"] +version = "0.7.10" [deps.Zygote.extensions] + ZygoteAtomExt = "Atom" ZygoteColorsExt = "Colors" ZygoteDistancesExt = "Distances" ZygoteTrackerExt = "Tracker" + [deps.Zygote.weakdeps] + Atom = "c52e3926-4ff0-5f6e-af25-54175e0327b1" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/10-bayesian-differential-equations/Manifest.toml b/tutorials/10-bayesian-differential-equations/Manifest.toml index e7a19a6fd..2a015ba77 100644 --- a/tutorials/10-bayesian-differential-equations/Manifest.toml +++ b/tutorials/10-bayesian-differential-equations/Manifest.toml @@ -1,13 +1,19 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "1cf8b95959ac0235940751347a1e8ff1481cfa25" +project_hash = "e516c287fc3f58c15d263c5f53d8ba30af77cb9d" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +27,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,31 +123,59 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.AlmostBlockDiagonals]] +deps = ["ConcreteStructs"] +git-tree-sha1 = "743abe5e5fe8cff96dad4123f263c0d8eee281c0" +uuid = "a95523ee-d6da-40b5-98cc-27bc505739d5" +version = "0.1.10" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.2.0" +version = "0.4.0" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -109,22 +184,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -132,48 +213,86 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "e5f08b5689b1aad068e01751889f2f615c7db36d" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.29" +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.12.2" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" uuid = 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BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -181,10 +300,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -192,43 +313,45 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] -git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.5" +version = "0.1.6" [[deps.BoundaryValueDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NonlinearSolve", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools", "TruncatedStacktraces", "UnPack"] -git-tree-sha1 = "de4f02f54b760a6a68b7fb57185275266c09beca" +deps = ["ADTypes", "BoundaryValueDiffEqAscher", "BoundaryValueDiffEqCore", "BoundaryValueDiffEqFIRK", "BoundaryValueDiffEqMIRK", "BoundaryValueDiffEqMIRKN", "BoundaryValueDiffEqShooting", "DiffEqBase", "FastClosures", "ForwardDiff", "LinearAlgebra", "OrdinaryDiffEqTsit5", "Reexport", "SciMLBase"] +git-tree-sha1 = "601b16cb493a593e2a5c459fdcbf40c6834d0354" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.1.0" +version = "5.20.0" [deps.BoundaryValueDiffEq.extensions] BoundaryValueDiffEqODEInterfaceExt = "ODEInterface" @@ -236,97 +359,157 @@ version = "5.1.0" [deps.BoundaryValueDiffEq.weakdeps] ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" 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"TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -334,31 +517,36 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = 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"e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -385,9 +573,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -396,20 +584,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.CpuId]] deps = ["Markdown"] @@ -423,15 +611,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -441,6 +629,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -448,10 +643,10 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[deps.DelayDiffEq]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "df712c77bb43b37ea966feb72cb2e92d51a3face" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "FastBroadcast", "ForwardDiff", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "SymbolicIndexingInterface"] +git-tree-sha1 = "55d51bd800f45c746e5e92e16ab3e88d8df54117" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.43.1" +version = "5.68.0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -466,50 +661,65 @@ uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" version = "0.4.0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "95b6df71e218379a831874215b0effaac791d7d7" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "71eb86b6c30d629617e427263fee4cef1f0f51cf" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.133.1" +version = "6.206.0" [deps.DiffEqBase.extensions] - DiffEqBaseDistributionsExt = "Distributions" - DiffEqBaseEnzymeExt = "Enzyme" + DiffEqBaseCUDAExt = "CUDA" + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseFlexUnitsExt = "FlexUnits" + DiffEqBaseForwardDiffExt = ["ForwardDiff"] + DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseMooncakeExt = "Mooncake" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" + ForwardDiff = 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"LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.33.0" -weakdeps = ["OrdinaryDiffEq", "Sundials"] +version = "4.12.0" +weakdeps = ["Functors"] + + [deps.DiffEqCallbacks.extensions] + DiffEqCallbacksFunctorsExt = "Functors" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "57ed4597a309c5b2a10cab5f9813adcb78f92117" +deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.19.0" -weakdeps = ["ReverseDiff"] +version = "5.27.0" +weakdeps = ["Optim", "ReverseDiff"] [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessOptimExt = "Optim" DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" [[deps.DiffResults]] @@ -526,15 +736,65 @@ version = "1.15.1" [[deps.DifferentialEquations]] deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"] -git-tree-sha1 = "19a5b6314715139ddefea4108a105bb9b90dc4fb" +git-tree-sha1 = "1df783c534cd0c4a865a397b1c4801771b5cbb07" uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa" -version = "7.11.0" +version = "7.17.0" + 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TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -2232,29 +3270,13 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.TreeViews]] -deps = ["Test"] -git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" -uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" -version = "0.3.0" - -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "31eedbc0b6d07c08a700e26d31298ac27ef330eb" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.19" - -[[deps.Tricks]] 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"ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.65" -weakdeps = ["Colors", "Distances", "Tracker"] +version = "0.7.10" [deps.Zygote.extensions] + ZygoteAtomExt = "Atom" ZygoteColorsExt = "Colors" ZygoteDistancesExt = "Distances" ZygoteTrackerExt = "Tracker" + [deps.Zygote.weakdeps] + Atom = "c52e3926-4ff0-5f6e-af25-54175e0327b1" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2022.0.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/11-probabilistic-pca/Manifest.toml b/tutorials/11-probabilistic-pca/Manifest.toml index 54d4e80e3..250a303b8 100644 --- a/tutorials/11-probabilistic-pca/Manifest.toml +++ b/tutorials/11-probabilistic-pca/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "ef462fc173a4ba83c350dd73690f805ff0c2abe7" +project_hash = "82b73d50253c62c2490286eb0cd081a5a88d0431" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,21 +458,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -389,6 +482,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -419,11 +519,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = 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"8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -464,127 +616,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = 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FillArraysStatisticsExt = "Statistics" +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.29.0" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" +version = "2.17.1+0" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "1.3.2" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -592,15 +776,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.4+0" [[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" +version = "1.0.17+0" [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" @@ -614,56 +798,69 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" [[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] +git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = 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"28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.22" + + [deps.GR.extensions] + IJuliaExt = "IJulia" + + [deps.GR.weakdeps] + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -671,22 +868,22 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -694,63 +891,77 @@ uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.5" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" -uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2023.2.0+0" + [deps.InlineStrings.weakdeps] + ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" + +[[deps.IntegerMathUtils]] +git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" +uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" +version = "0.1.3" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "721ec2cf720536ad005cb38f50dbba7b02419a15" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "65d505fa4c0d7072990d659ef3fc086eb6da8208" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.14.7" +version = "0.16.2" + + [deps.Interpolations.extensions] + InterpolationsForwardDiffExt = "ForwardDiff" + InterpolationsUnitfulExt = "Unitful" + + [deps.Interpolations.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -deps = ["Dates", "Random"] -git-tree-sha1 = "8e59ea773deee525c99a8018409f64f19fb719e6" +git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.7" -weakdeps = ["Statistics"] +version = "0.7.13" +weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.1.17" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" +version = "1.3.1" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.6" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.8.0" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -758,216 +969,202 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.4" +version = "1.4.0" + + [deps.JSON.extensions] + JSONArrowExt = ["ArrowTypes"] + + [deps.JSON.weakdeps] + ArrowTypes = 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= "NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" + + [deps.SparseConnectivityTracer.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = 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"SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1705,48 +2198,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = 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-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/12-gplvm/Manifest.toml b/tutorials/12-gplvm/Manifest.toml index 808b6738f..860e53b41 100644 --- a/tutorials/12-gplvm/Manifest.toml +++ b/tutorials/12-gplvm/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "390f0ff830d7e11242f044c4b0d23eedcbb7a091" +project_hash = "51a341eaee54b0d15629e2bc3b6dae3b5903de00" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -22,58 +32,99 @@ weakdeps = ["ChainRulesCore", "Test"] [[deps.AbstractGPs]] deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] -git-tree-sha1 = "6e5e13c57dbfdedddbc3ef727586d8ee0703d50a" +git-tree-sha1 = "8a05cefb7c891378c89576bd4865f34d010c9ece" uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" -version = "0.5.19" +version = "0.5.24" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -82,37 +133,65 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -120,42 +199,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -163,10 +244,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -174,124 +257,138 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.CSV]] deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a" +git-tree-sha1 = "8d8e0b0f350b8e1c91420b5e64e5de774c2f0f4d" uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.11" +version = "0.10.16" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.CategoricalArrays]] -deps = ["DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] -git-tree-sha1 = "1568b28f91293458345dabba6a5ea3f183250a61" +deps = ["Compat", "DataAPI", "Future", "Missings", "Printf", "Requires", "Statistics", "Unicode"] +git-tree-sha1 = "73acb4ed51b1855e1b5ce5c610334363a98d13f1" uuid = "324d7699-5711-5eae-9e2f-1d82baa6b597" -version = "0.10.8" +version = "1.0.2" [deps.CategoricalArrays.extensions] + CategoricalArraysArrowExt = "Arrow" CategoricalArraysJSONExt = "JSON" CategoricalArraysRecipesBaseExt = "RecipesBase" CategoricalArraysSentinelArraysExt = "SentinelArrays" + CategoricalArraysStatsBaseExt = "StatsBase" CategoricalArraysStructTypesExt = "StructTypes" [deps.CategoricalArrays.weakdeps] + Arrow = "69666777-d1a9-59fb-9406-91d4454c9d45" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SentinelArrays = "91c51154-3ec4-41a3-a24f-3f23e20d615c" + StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" StructTypes = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -299,31 +396,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -332,7 +429,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -345,9 +442,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -356,20 +453,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -377,21 +474,21 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -401,6 +498,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -431,11 +535,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + 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"JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.22" + + [deps.GR.extensions] + IJuliaExt = "IJulia" + + [deps.GR.weakdeps] + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -695,22 +905,22 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -718,63 +928,77 @@ uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.0" +version = "1.4.5" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" + [deps.InlineStrings.extensions] + ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" -[[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = 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git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -782,222 +1006,208 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.7.1" [[deps.JSON]] -deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" +deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] +git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" uuid = 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"StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.7.2" + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] 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"ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1663,9 +2178,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "d39314cdbaf5b90a047db33858626f8d1cc973e1" +git-tree-sha1 = "72df96b3a595b7aab1e101eb07d2a435963a97e2" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.0.0+2023c" +version = "1.5.0+2025b" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1674,10 +2189,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1699,40 +2214,31 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimeZones]] -deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "LazyArtifacts", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "89e64d61ef3cd9e80f7fc12b7d13db2d75a23c03" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "d422301b2a1e294e3e4214061e44f338cafe18a2" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = 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"Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1740,48 +2246,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = 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"StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1789,34 +2285,6 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", 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[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/13-seasonal-time-series/Manifest.toml b/tutorials/13-seasonal-time-series/Manifest.toml index 03b27bc5a..c80f7fbc1 100644 --- a/tutorials/13-seasonal-time-series/Manifest.toml +++ b/tutorials/13-seasonal-time-series/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "8465c369abb7f6ef05a55c9b93c53a6097762489" +project_hash = "62c52c45a97327b76c056554673ab1260df16c2c" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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"Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "6c174ef70c96c76f4c3f4d3cfbe09d018bcd1b53" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" +version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" +version = "0.9.12+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/14-minituring/Manifest.toml b/tutorials/14-minituring/Manifest.toml index 9868d2594..0d0a6ee81 100644 --- a/tutorials/14-minituring/Manifest.toml +++ b/tutorials/14-minituring/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "31266805170f7b1d6aa8609e6114be070df1b249" +project_hash = "0782a77bfb6b07fe3fddaa4ab022b655731cc39a" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,37 +127,61 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "2.5.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -114,42 +189,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -157,10 +234,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -168,81 +247,87 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -251,7 +336,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -269,14 +354,14 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Crayons]] @@ -285,15 +370,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -303,6 +388,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -333,26 +419,78 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -367,85 +505,103 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = 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"Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.29.0" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "1.3.2" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -463,84 +619,92 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" [[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] +git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.5" +version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = 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"efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" +version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" +version = "1.11.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.12.0" + +[[deps.SparseConnectivityTracer]] +deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "590b72143436e443888124aaf4026a636049e3f5" +uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" +version = "1.2.1" + + [deps.SparseConnectivityTracer.extensions] + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" + SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" + SparseConnectivityTracerNNlibExt = "NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" + + [deps.SparseConnectivityTracer.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.23" + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" + SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] + + [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + JuMP = "4076af6c-e467-56ae-b986-b466b2749572" + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "e2cfc4012a19088254b3950b85c3c1d8882d864d" +git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.3.1" +version = "2.7.1" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1079,48 +1443,54 @@ uuid = "171d559e-b47b-412a-8079-5efa626c420e" version = "0.1.15" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore"] -git-tree-sha1 = "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.17" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" +version = "1.8.0" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" +version = "0.34.10" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1129,30 +1499,67 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a3c1536470bf8c5e02096ad4853606d7c8f62721" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.2" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.7.2" + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1166,15 +1573,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" +version = "1.12.1" [[deps.TerminalLoggers]] deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] @@ -1185,24 +1587,16 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" +version = "1.11.0" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1210,83 +1604,47 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "1.11.0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "248a7031b3da79a127f14e5dc5f417e26f9f6db7" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.1.0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "5.15.0+0" diff --git a/tutorials/15-gaussian-processes/Manifest.toml b/tutorials/15-gaussian-processes/Manifest.toml index 4beb82d5d..644dee4ae 100644 --- a/tutorials/15-gaussian-processes/Manifest.toml +++ b/tutorials/15-gaussian-processes/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "6b58e2d02b44e64312fc865e24484ed638995104" +project_hash = "3502703e3c57637ca47369e240f31caee6a7006d" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -22,58 +32,99 @@ weakdeps = ["ChainRulesCore", "Test"] [[deps.AbstractGPs]] deps = ["ChainRulesCore", "Distributions", "FillArrays", "IrrationalConstants", "KernelFunctions", "LinearAlgebra", "PDMats", "Random", "RecipesBase", "Reexport", "Statistics", "StatsBase", "Test"] -git-tree-sha1 = "6e5e13c57dbfdedddbc3ef727586d8ee0703d50a" +git-tree-sha1 = "8a05cefb7c891378c89576bd4865f34d010c9ece" uuid = "99985d1d-32ba-4be9-9821-2ec096f28918" -version = "0.5.19" +version = "0.5.24" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -82,37 +133,65 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -120,42 +199,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -163,10 +244,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -174,106 +257,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = 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"d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -281,31 +374,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -314,7 +407,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -327,9 +420,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -338,20 +431,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -359,27 +452,27 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataDeps]] -deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"] -git-tree-sha1 = "6e8d74545d34528c30ccd3fa0f3c00f8ed49584c" +deps = ["HTTP", "Libdl", "Reexport", "SHA", "Scratch", "p7zip_jll"] +git-tree-sha1 = "8ae085b71c462c2cb1cfedcb10c3c877ec6cf03f" uuid = "124859b0-ceae-595e-8997-d05f6a7a8dfe" -version = "0.7.11" +version = "0.7.13" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.8.1" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -389,6 +482,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -419,11 +519,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -433,23 +583,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -464,133 +616,170 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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-git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = 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"801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-00-getting-started/Manifest.toml b/tutorials/docs-00-getting-started/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-00-getting-started/Manifest.toml +++ b/tutorials/docs-00-getting-started/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = 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"MuladdMacro", "Primes", "Random", "Reexport"] +git-tree-sha1 = "65e55303b72f4a567a51b174dd2c47496efeb95a" +uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" +version = "0.3.1" -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" +[[deps.FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" +version = "0.3.2" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random"] -git-tree-sha1 = "a20eaa3ad64254c61eeb5f230d9306e937405434" +deps = ["LinearAlgebra"] +git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.6.1" -weakdeps = ["SparseArrays", "Statistics"] +version = "1.16.0" +weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.29.0" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = 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+git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-01-contributing-guide/Manifest.toml b/tutorials/docs-01-contributing-guide/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-01-contributing-guide/Manifest.toml +++ b/tutorials/docs-01-contributing-guide/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] 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RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = 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"d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" +version = "1.1.7+0" [[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "6c174ef70c96c76f4c3f4d3cfbe09d018bcd1b53" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" +version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" - -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" +version = "0.9.12+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "b4bfde5d5b652e22b9c790ad00af08b6d042b97d" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-02-contributing-style-guide/Manifest.toml b/tutorials/docs-02-contributing-style-guide/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-02-contributing-style-guide/Manifest.toml +++ b/tutorials/docs-02-contributing-style-guide/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = 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"Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +git-tree-sha1 = "7bebc8aad6ee6217c78c5ddcf7ed289d65d0263e" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" +version = "1.0.6" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = 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[deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface"] LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -965,7 +1155,9 @@ version = "1.5.0" LogDensityProblemsADZygoteExt = "Zygote" [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -975,9 +1167,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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"SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", 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"DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1650,30 +2149,21 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = 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-version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = 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"Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1730,34 +2210,6 @@ 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"Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" +version = "1.8.13+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +git-tree-sha1 = "aa1261ebbac3ccc8d16558ae6799524c450ed16b" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" +version = "1.0.13+0" [[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "6c74ca84bbabc18c4547014765d194ff0b4dc9da" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" +version = "1.2.4+0" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", 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"330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml index 7ac49d08b..0ac4bbd4a 100644 --- a/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-03-using-turing-sampler-viz/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "5d3b8b9eb7683443ea8ae96e6fef297715042a31" +project_hash = "11b626d43ce8a48614b99d16139c797dfeefcfae" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = 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"DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = 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"GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.22" + + [deps.GR.extensions] + IJuliaExt = "IJulia" + + [deps.GR.weakdeps] + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] 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"ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" 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"Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1376,103 +1722,171 @@ version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version 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= "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = 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"14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml +++ b/tutorials/docs-04-for-developers-abstractmcmc-turing/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = 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-git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", 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"CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = 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"0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-05-for-developers-compiler/Manifest.toml b/tutorials/docs-05-for-developers-compiler/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-05-for-developers-compiler/Manifest.toml +++ b/tutorials/docs-05-for-developers-compiler/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = 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["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = 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"Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-06-for-developers-interface/Manifest.toml b/tutorials/docs-06-for-developers-interface/Manifest.toml index 0d130560a..4c22844e1 100644 --- a/tutorials/docs-06-for-developers-interface/Manifest.toml +++ b/tutorials/docs-06-for-developers-interface/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "c2c40f5436f7cfb3d611046e88c24da658e5bf55" +project_hash = "b91d8083cb41856b932b6bc77bf18e7218a341fe" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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+git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.2" +version = "0.34.10" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,36 +2038,73 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" 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"SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", 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"DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1650,30 +2149,21 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = 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"Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-07-for-developers-variational-inference/Manifest.toml +++ b/tutorials/docs-07-for-developers-variational-inference/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = 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"DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = 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"LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", 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= "1.15.0+0" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-08-using-turing/Manifest.toml b/tutorials/docs-08-using-turing/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-08-using-turing/Manifest.toml +++ b/tutorials/docs-08-using-turing/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = 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= ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = 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"libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "8.0.1+0" -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +[[deps.FFTA]] +deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] +git-tree-sha1 = "65e55303b72f4a567a51b174dd2c47496efeb95a" +uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" +version = "0.3.1" 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FillArraysStatisticsExt = "Statistics" +[[deps.FiniteDiff]] +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" +version = "2.29.0" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" 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= "SparseArrays" + SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" + +[[deps.SciMLPublic]] +git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.1" + +[[deps.SciMLStructures]] +deps = ["ArrayInterface", "PrecompileTools"] +git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.10.0" [[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +deps = ["InteractiveUtils"] +git-tree-sha1 = "e785eaa35a0f5518a388f9010e66fda64ea95ede" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" +version = "3.1.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" +git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.0" +version = "1.3.0" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = 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= "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" +version = "1.2.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.12.0" + +[[deps.SparseConnectivityTracer]] +deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "590b72143436e443888124aaf4026a636049e3f5" +uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" +version = "1.2.1" + + [deps.SparseConnectivityTracer.extensions] + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" + SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" + SparseConnectivityTracerNNlibExt = "NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" + + [deps.SparseConnectivityTracer.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "91402087fd5d13b2d97e3ef29bbdf9d7859e678a" +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" -version = "0.1.1" +version = "0.1.2" + +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", 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"Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.9.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" 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"1.3.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -1576,36 +2038,73 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StatsPlots]] deps = ["AbstractFFTs", "Clustering", "DataStructures", "Distributions", "Interpolations", "KernelDensity", "LinearAlgebra", "MultivariateStats", "NaNMath", "Observables", "Plots", "RecipesBase", "RecipesPipeline", "Reexport", "StatsBase", "TableOperations", "Tables", "Widgets"] -git-tree-sha1 = "9115a29e6c2cf66cf213ccc17ffd61e27e743b24" +git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.15.6" +version = "0.15.8" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a3c1536470bf8c5e02096ad4853606d7c8f62721" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.2" [[deps.StructArrays]] -deps = ["Adapt", "ConstructionBase", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] -git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.7.2" + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1625,10 +2124,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -1650,30 +2149,21 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" +version = "1.11.0" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = 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"Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-09-using-turing-advanced/Manifest.toml b/tutorials/docs-09-using-turing-advanced/Manifest.toml index ec051a138..46c5cfecf 100644 --- a/tutorials/docs-09-using-turing-advanced/Manifest.toml +++ b/tutorials/docs-09-using-turing-advanced/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "4c0c886318004c9a56b597cb6e8faf8fe1ac07ac" +project_hash = "8101ac769f176696d6b3f3de8cc930565e7d8a47" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + 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-git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = 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"Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = 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"JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-10-using-turing-autodiff/Manifest.toml b/tutorials/docs-10-using-turing-autodiff/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-10-using-turing-autodiff/Manifest.toml +++ b/tutorials/docs-10-using-turing-autodiff/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" 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"93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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"975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml index 25fbf5198..e559507fd 100644 --- a/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml +++ b/tutorials/docs-11-using-turing-dynamichmc/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "f6bac772a1c0780a37a1f9e868095eea94af1f8e" +project_hash = "381e9b90a010d7468848060cebed3c231b4d64b5" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = 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"NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = 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"DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,133 +610,165 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = 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"FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" +version = "2.17.1+0" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = 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IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "68772f49f54b479fa88ace904f6127f0a3bb2e46" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.12" +version = "0.1.17" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] -git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.0" +version = "1.3.1" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.6" [[deps.IterTools]] -git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" +git-tree-sha1 = 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"47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -987,9 +1179,9 @@ version = "1.5.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa" +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.26" +version = "0.3.29" weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [deps.LogExpFunctions.extensions] @@ -999,122 +1191,123 @@ weakdeps = ["ChainRulesCore", "ChangesOfVariables", "InverseFunctions"] [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] 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SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = 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-git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" +version = "1.11.0" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.13" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1705,6 +2215,7 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" @@ -1713,51 +2224,38 @@ version = "0.4.78" [[deps.TransmuteDims]] deps = ["Adapt", "ChainRulesCore", "GPUArraysCore", "LinearAlgebra", "Requires", "Strided"] -git-tree-sha1 = "64df189c13692b9581924775109cb14a6b5aef8d" +git-tree-sha1 = "488b1a1effa8c0b97cd3335a7c1cbd23a3f2f6d3" uuid = "24ddb15e-299a-5cc3-8414-dbddc482d9ca" -version = "0.1.15" - -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" +version = "0.1.17" [[deps.TupleTools]] -git-tree-sha1 = "155515ed4c4236db30049ac1495e2969cc06be9d" +git-tree-sha1 = "41e43b9dc950775eac654b9f845c839cd2f1821e" uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.4.3" +version = "1.6.0" [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" +weakdeps = ["DynamicHMC"] [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" - - [deps.Turing.weakdeps] - DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1765,34 +2263,6 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.17.0" -weakdeps = ["ConstructionBase", 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-git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "1a4a26870bf1e5d26cd585e38038d399d7e65706" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" +version = "1.3.8+0" [[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" +version = "6.0.2+0" [[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" uuid = 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[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-12-using-turing-guide/Manifest.toml b/tutorials/docs-12-using-turing-guide/Manifest.toml index c71163593..a813c78b4 100644 --- a/tutorials/docs-12-using-turing-guide/Manifest.toml +++ b/tutorials/docs-12-using-turing-guide/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "b7d5f57d9eda90053bb4603ac4234cf8d9b7d1b7" +project_hash = "44a6a0a14125cc74536df064737bccc032ae2e8e" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,143 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = 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"4558ab818dcceaab612d1bb8c19cee87eda2b83c" +git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" +version = "2.7.3+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.ExproniconLite]] +git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" +uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" +version = "0.10.14" + [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "8.0.1+0" -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +[[deps.FFTA]] +deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] +git-tree-sha1 = "65e55303b72f4a567a51b174dd2c47496efeb95a" +uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" +version = "0.3.1" -[[deps.FFTW_jll]] -deps = ["Artifacts", 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[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "c6e4a1fbe73b31a3dea94b1da449503b8830c306" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.21.1" +version = "2.29.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" FiniteDiffStaticArraysExt = "StaticArrays" [deps.FiniteDiff.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = 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"LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "1.3.2" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -602,15 +770,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.4+0" [[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = 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"Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.4.1+0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.2.0" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.22" + + [deps.GR.extensions] + IJuliaExt = "IJulia" + + [deps.GR.weakdeps] + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -681,80 +862,87 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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= "0adf069a2a490c47273727e029371b31d44b72b2" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.6.5" -weakdeps = ["Statistics"] +version = "1.9.17" +weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.2" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "30b9236691858e13f167ce829490a68e1a597782" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.2.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", 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"SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", 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"JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml index fcde28eba..8b20233b3 100644 --- a/tutorials/docs-13-using-turing-performance-tips/Manifest.toml +++ b/tutorials/docs-13-using-turing-performance-tips/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "f00de2f83fe88b91151dd081220b759ce23173e6" +project_hash = "ecd948b0d0817f78a8c2861034d5916ba5288523" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,37 +127,61 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" - -[[deps.ArgTools]] -uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "2.5.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -114,42 +189,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -157,10 +234,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -168,81 +247,87 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -251,7 +336,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -269,14 +354,14 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Crayons]] @@ -285,15 +370,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -303,6 +388,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -333,26 +419,78 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -367,85 +505,103 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" - -[[deps.Downloads]] -deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] -uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "0.9.5" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", 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-git-tree-sha1 = "0a3db38e4cce3c54fe7a71f831cd7b6194a54213" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.16" +version = "0.7.2" + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "5.10.1+6" +version = "7.8.3+2" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.2.2" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.TOML]] deps = ["Dates"] @@ -1172,15 +1579,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "a1f34829d5ac0ef499f6d84428bd6b4c71f02ead" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.0" - -[[deps.Tar]] -deps = ["ArgTools", "SHA"] -uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.0" +version = "1.12.1" [[deps.TerminalLoggers]] deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] @@ -1191,24 +1593,16 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.Tracker]] -deps = ["Adapt", "DiffRules", "ForwardDiff", "Functors", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NNlib", "NaNMath", "Optimisers", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "994c4977c13e7e2525566e193f82374021fab5dd" -uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -version = "0.2.27" -weakdeps = ["PDMats"] - - [deps.Tracker.extensions] - TrackerPDMatsExt = "PDMats" +version = "1.11.0" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "53bd5978b182fa7c57577bdb452c35e5b4fb73a5" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1216,83 +1610,47 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" -uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" - -[[deps.TruncatedStacktraces]] -deps = ["InteractiveUtils", "MacroTools", "Preferences"] -git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" -uuid = "781d530d-4396-4725-bb49-402e4bee1e77" -version = "1.4.0" - [[deps.Turing]] -deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Printf", "Random", "Reexport", "Requires", "SciMLBase", "Setfield", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "609cd8adb3c40a27d770e4b971c73ccb8df56499" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "923ba6ce1ab6b3d95f5efe1daad92369553aadfe" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.29.2" +version = "0.42.8" [deps.Turing.extensions] TuringDynamicHMCExt = "DynamicHMC" - TuringOptimExt = "Optim" [deps.Turing.weakdeps] DynamicHMC = "bbc10e6e-7c05-544b-b16e-64fede858acb" - Optim = "429524aa-4258-5aef-a3af-852621145aeb" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" - -[[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" -uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" - -[[deps.UnsafeAtomicsLLVM]] -deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "323e3d0acf5e78a56dfae7bd8928c989b4f3083e" -uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.3" +version = "1.11.0" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "de67fa59e33ad156a590055375a30b23c40299d3" +git-tree-sha1 = "248a7031b3da79a127f14e5dc5f417e26f9f6db7" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "0.5.5" - -[[deps.Zlib_jll]] -deps = ["Libdl"] -uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.1.0" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "5.15.0+0" diff --git a/tutorials/docs-14-using-turing-quick-start/Manifest.toml b/tutorials/docs-14-using-turing-quick-start/Manifest.toml index f10c27030..abeb71ebe 100644 --- a/tutorials/docs-14-using-turing-quick-start/Manifest.toml +++ b/tutorials/docs-14-using-turing-quick-start/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "102d486b18af7951cac72d56aec7c8e37b50a316" +project_hash = "8d80bc658ac4e2662aeafe696bfc4005b0ffb0ef" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.10" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -427,23 +577,25 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] -deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "3d5873f811f582873bb9871fc9c451784d5dc8c7" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.102" -weakdeps = ["ChainRulesCore", "DensityInterface"] +version = "0.25.123" +weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" [[deps.DistributionsAD]] deps = ["Adapt", "ChainRules", "ChainRulesCore", "Compat", "Distributions", "FillArrays", "LinearAlgebra", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsFuns", "ZygoteRules"] -git-tree-sha1 = "d61f08c7bd15c5ab215fd7a2eb61c1ae15d8ff5e" +git-tree-sha1 = "4acbf909e892ce1f94c39a138541566c1aad5e66" uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" -version = "0.6.53" +version = "0.6.58" [deps.DistributionsAD.extensions] DistributionsADForwardDiffExt = "ForwardDiff" @@ -458,127 +610,159 @@ version = "0.6.53" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.6.0" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.7.0" [[deps.DynamicPPL]] -deps = ["AbstractMCMC", "AbstractPPL", "BangBang", "Bijectors", "ChainRulesCore", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Random", "Requires", "Setfield", "Test", "ZygoteRules"] -git-tree-sha1 = "93e9f403d27137db580cd381943d3a8832beb70f" +deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Chairmarks", "Compat", "ConstructionBase", "DifferentiationInterface", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "MacroTools", "OrderedCollections", "Printf", "Random", "Statistics", "Test"] +git-tree-sha1 = "2094be08e519dd8bca023f16643c0b1db300615f" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.23.19" -weakdeps = ["MCMCChains"] +version = "0.39.13" [deps.DynamicPPL.extensions] + DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] + DynamicPPLEnzymeCoreExt = ["EnzymeCore"] + DynamicPPLForwardDiffExt = ["ForwardDiff"] + DynamicPPLJETExt = ["JET"] DynamicPPLMCMCChainsExt = ["MCMCChains"] + DynamicPPLMarginalLogDensitiesExt = ["MarginalLogDensities"] + DynamicPPLMooncakeExt = ["Mooncake"] + + [deps.DynamicPPL.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + JET = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + MarginalLogDensities = "f0c3360a-fb8d-11e9-1194-5521fd7ee392" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.EllipticalSliceSampling]] deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] -git-tree-sha1 = "973b4927d112559dc737f55d6bf06503a5b3fc14" +git-tree-sha1 = "e611b7fdfbfb5b18d5e98776c30daede41b44542" uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" -version = "1.1.0" +version = "2.0.0" [[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +git-tree-sha1 = "7bebc8aad6ee6217c78c5ddcf7ed289d65d0263e" uuid = 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"e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.ExproniconLite]] +git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" +uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" +version = "0.10.14" + [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" +version = "8.0.1+0" -[[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" -uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.7.1" +[[deps.FFTA]] +deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] +git-tree-sha1 = "65e55303b72f4a567a51b174dd2c47496efeb95a" +uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" +version = "0.3.1" -[[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" -uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" +[[deps.FastClosures]] +git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" +uuid = 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= "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" +version = "2.17.1+0" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" +git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.36" +version = "1.3.2" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -586,15 +770,15 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.13.4+0" [[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" +version = "1.0.17+0" [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" @@ -608,56 +792,69 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" [[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "9a68d75d466ccc1218d0552a8e1631151c569545" +deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] +git-tree-sha1 = 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-version = "0.1.5" +version = "0.2.0" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.10" +version = "0.73.22" + + [deps.GR.extensions] + IJuliaExt = "IJulia" + + [deps.GR.weakdeps] + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd" +git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.10+0" +version = "0.73.22+0" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.76.5+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -665,80 +862,87 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.0" +version = "1.10.19" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.28" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" -[[deps.InplaceOps]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" -uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" -version = "0.3.0" - -[[deps.IntelOpenMP_jll]] -deps = 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"Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "SplittablesBase", "Tables"] +git-tree-sha1 = "4aa1fdf6c1da74661f6f5d3edfd96648321dade9" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.78" +version = "0.4.85" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -1681,48 +2171,38 @@ version = "0.4.78" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.Tricks]] -git-tree-sha1 = 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"Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml index 0151bbac4..8c80e8697 100644 --- a/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml +++ b/tutorials/docs-15-using-turing-sampler-viz/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "d42320247f27a85a88c7c5de8259eefe9da423db" +project_hash = "8d7a8a155fc365630194f01649e381a60dda3fa1" [[deps.ADTypes]] -git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.4" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,53 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.43" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -76,25 +127,47 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -103,22 +176,28 @@ uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" version = "0.5.4" [[deps.Arpack_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS_jll", "Pkg"] -git-tree-sha1 = "5ba6c757e8feccf03a1554dfaf3e26b3cfc7fd5e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "7f54761502ff149a9d492e4acefe9805898e29b3" uuid = "68821587-b530-5797-8361-c406ea357684" -version = "3.5.1+1" +version = "3.5.2+0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -126,42 +205,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -169,10 +250,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -180,106 +263,116 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.5+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "b66b8f8e3db5d7835fb8cbe2589ffd1cd456e491" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.17.0" +version = "1.26.0" +weakdeps = ["SparseArrays"] + + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" + +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "05f9816a77231b07e634ab8715ba50e5249d6f76" +git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" -version = "0.15.5" +version = "0.15.8" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.24.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -287,31 +380,31 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +version = "0.13.1" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -320,7 +413,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -333,9 +426,9 @@ weakdeps = ["InverseFunctions"] [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -344,20 +437,20 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -365,15 +458,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -383,6 +476,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -413,11 +513,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.7.16" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGTPSAExt = "GTPSA" + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = 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RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" + RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = 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["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.15.0+0" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.44.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.3.1+2" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.5+0" +version = "1.5.7+1" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.1+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.15.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.55+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.64.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.7.0+0" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.13.0+0" diff --git a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml index 6a0fc46ca..7594cc40b 100644 --- a/tutorials/docs-16-using-turing-external-samplers/Manifest.toml +++ b/tutorials/docs-16-using-turing-external-samplers/Manifest.toml @@ -1,13 +1,23 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.12.5" manifest_format = "2.0" -project_hash = "6559f27b923d65d4f9f21538db968bd03760e383" +project_hash = "0c7e194dbac48bc39f20f3420f0c614a8b6a57a5" [[deps.ADTypes]] -git-tree-sha1 = "f5c25e8a5b29b5e941b7408bc8cc79fea4d9ef9a" +git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.1.6" +version = "1.21.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,72 +31,94 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers", "UUIDs"] +git-tree-sha1 = "511d0d8cbf38045be05188ae26880afb57342a88" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.14.0" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractPPL]] -deps = ["AbstractMCMC", "DensityInterface", "Random", "Setfield", "SparseArrays"] -git-tree-sha1 = "caa9b62583577b0d6b222f11f54aa29fabbdb5ca" +deps = ["AbstractMCMC", "Accessors", "DensityInterface", "JSON", "LinearAlgebra", "Random", "StatsBase"] +git-tree-sha1 = "66aed89871b6a8458bb407327fa997d980ea894f" uuid = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf" -version = "0.6.2" +version = "0.13.6" +weakdeps = ["Distributions"] + + [deps.AbstractPPL.extensions] + AbstractPPLDistributionsExt = ["Distributions"] [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" [[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Test"] -git-tree-sha1 = "a7055b939deae2455aa8a67491e034f735dd08d3" +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.33" +version = "0.1.43" [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" [deps.Accessors.weakdeps] AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" -weakdeps = ["StaticArrays"] +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" [[deps.AdvancedMH]] -deps = ["AbstractMCMC", "Distributions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] -git-tree-sha1 = "b2a1602952739e589cf5e2daff1274a49f22c9a4" +deps = ["AbstractMCMC", "Distributions", "DocStringExtensions", "FillArrays", "LinearAlgebra", "LogDensityProblems", "Random", "Requires"] +git-tree-sha1 = "62ddbccf0ce5c26f8ef3cebe4bedef6b1599d616" uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" -version = "0.7.5" +version = "0.8.10" weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] [deps.AdvancedMH.extensions] @@ -95,37 +127,65 @@ weakdeps = ["DiffResults", "ForwardDiff", "MCMCChains", "StructArrays"] AdvancedMHStructArraysExt = "StructArrays" [[deps.AdvancedPS]] -deps = ["AbstractMCMC", "Distributions", "Libtask", "Random", "Random123", "StatsFuns"] -git-tree-sha1 = "4d73400b3583147b1b639794696c78202a226584" +deps = ["AbstractMCMC", "Distributions", "Random", "Random123", "Requires", "SSMProblems", "StatsFuns"] +git-tree-sha1 = "d92dd3fb4cc2748860ae8d5dd1d324cf0715a53b" uuid = "576499cb-2369-40b2-a588-c64705576edc" -version = "0.4.3" +version = "0.7.2" +weakdeps = ["Libtask"] + + [deps.AdvancedPS.extensions] + AdvancedPSLibtaskExt = "Libtask" [[deps.AdvancedVI]] -deps = ["Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "ProgressMeter", "Random", "Requires", "StatsBase", "StatsFuns", "Tracker"] -git-tree-sha1 = "1f919a9c59cf3dfc68b64c22c453a2e356fca473" +deps = ["ADTypes", "Accessors", "ChainRulesCore", "DiffResults", "DifferentiationInterface", "Distributions", "DocStringExtensions", "FillArrays", "Functors", "LinearAlgebra", "LogDensityProblems", "Optimisers", "ProgressMeter", "Random", "StatsBase"] +git-tree-sha1 = "d69d7d9e1756fff9dd5d3fd26add46ee5ac62be4" uuid = "b5ca4192-6429-45e5-a2d9-87aec30a685c" -version = "0.2.4" +version = "0.6.2" + + [deps.AdvancedVI.extensions] + AdvancedVIBijectorsExt = ["Bijectors", "Optimisers"] + AdvancedVIEnzymeExt = ["Enzyme", "ChainRulesCore"] + AdvancedVIMooncakeExt = ["Mooncake", "ChainRulesCore"] + AdvancedVIReverseDiffExt = ["ReverseDiff", "ChainRulesCore"] + + [deps.AdvancedVI.weakdeps] + Bijectors = "76274a88-744f-5084-9051-94815aaf08c4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.22.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -133,42 +193,44 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" - -[[deps.Atomix]] -deps = ["UnsafeAtomics"] -git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" -uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "0.1.0" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] -git-tree-sha1 = "66771c8d21c8ff5e3a93379480a2307ac36863f7" +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" -version = "1.0.1" +version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "308d82aa3d83140909590aa5a7824540944f110f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" +version = "0.4.8" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -176,10 +238,12 @@ version = "0.3.39" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Baselet]] git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" @@ -187,85 +251,87 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijectors]] -deps = ["ArgCheck", "ChainRules", "ChainRulesCore", "ChangesOfVariables", "Compat", "Distributions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics"] -git-tree-sha1 = "8eacff457e5b8c13a97848484ad650dabbffa0fc" +deps = ["ArgCheck", "ChainRulesCore", "ChangesOfVariables", "Distributions", "DocStringExtensions", "Functors", "InverseFunctions", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "MappedArrays", "Random", "Reexport", "Roots", "SparseArrays", "Statistics"] +git-tree-sha1 = "52f3f101c0c541145da25fba9805f3ef076f2d96" uuid = "76274a88-744f-5084-9051-94815aaf08c4" -version = "0.13.7" +version = "0.15.16" [deps.Bijectors.extensions] BijectorsDistributionsADExt = "DistributionsAD" + BijectorsEnzymeCoreExt = "EnzymeCore" BijectorsForwardDiffExt = "ForwardDiff" BijectorsLazyArraysExt = "LazyArrays" + BijectorsMooncakeExt = "Mooncake" + BijectorsReverseDiffChainRulesExt = ["ChainRules", "ReverseDiff"] BijectorsReverseDiffExt = "ReverseDiff" - BijectorsTrackerExt = "Tracker" - BijectorsZygoteExt = "Zygote" [deps.Bijectors.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" DistributionsAD = "ced4e74d-a319-5a8a-b0ac-84af2272839c" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" - -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "01b0594d8907485ed894bc59adfc0a24a9cde7a3" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.55.0" +version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e0af648f0692ec1691b5d094b8724ba1346281cf" +git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.18.0" +version = "1.26.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" +[[deps.Chairmarks]] +deps = ["Printf", "Random"] +git-tree-sha1 = "9a49491e67e7a4d6f885c43d00bb101e6e5a434b" +uuid = "0ca39b1e-fe0b-4e98-acfc-b1656634c4de" +version = "1.3.1" +weakdeps = ["Statistics"] + + [deps.Chairmarks.extensions] + StatisticsChairmarksExt = ["Statistics"] + [[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" +deps = ["LinearAlgebra"] +git-tree-sha1 = "3aa4bf1532aa2e14e0374c4fd72bed9a9d0d0f6c" uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] +version = "0.1.10" +weakdeps = ["InverseFunctions", "Test"] [deps.ChangesOfVariables.extensions] ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" + ChangesOfVariablesTestExt = "Test" [[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" +git-tree-sha1 = "c761b00e7755700f9cdf5b02039939d1359330e1" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" +version = "1.1.0" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.10.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -274,7 +340,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.3.0+1" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -292,14 +358,14 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "c53fc348ca4d40d7b371e71fd52251839080cbc9" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.4" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.6.0" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Crayons]] @@ -308,21 +374,15 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.3" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -332,6 +392,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" @@ -362,26 +423,78 @@ git-tree-sha1 = 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DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = 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+ StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" + + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + +[[deps.StructUtils]] +deps = ["Dates", "UUIDs"] +git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" +version = "2.6.3" + + [deps.StructUtils.extensions] + StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsTablesExt = ["Tables"] + + [deps.StructUtils.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" + +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" 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