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I would suggest not to be explicit about where on the system a user should install qtools. I think just changing the README so that the instructions are a bit more general could avoid confusion and some other issues. Something like this maybe? Or alternatively using setuptools/pypi.
README content:
...
Clone the repository to your local directory:
mkdir -p <path_to_installation_folder> && cd <path_to_installation_folder>
git clone https://github.com/mpurg/qtools
Add this line to your ~/.bashrc or ~/.bash_profile:
source <path_to_installation_folder>/qtools/qtools_init.sh
...
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