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lines changed Original file line number Diff line number Diff line change 11#VCF Parser#
22Small library for parsing vcf files. Based on [ PyVCF] ( https://github.com/jamescasbon/PyVCF )
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4+ ** vcf_parser can split multi allelic calls in vcf now.**
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46 pip install vcf_parser
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8+ If used within a python environment:
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610``` python3
711 from vcf_parser import parser
812 my_parser = parser.VCFParser(infile = ' infile.vcf' )
913 for variant in my_parser:
1014 print (variant)
1115```
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13- ** vcf_parser can split multi allelic calls in vcf now.**
17+ or used as a command line tool
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19+ vcf_parser examples/test_vcf.vcf --split
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21+ Prints a new vcf with splitted variants to screen.
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1523Vcf parser is really a lightweight version of [ PyVCF] ( https://github.com/jamescasbon/PyVCF ) with most of it's code borrowed and modified from there.
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