versalign/pyproject.toml at main · moltools/versalign · GitHub

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[project]
name = "versalign"
version = "2.2.0"
description = "Naive alignment for lists of arbitrary objects"
readme = "README.md"
requires-python = ">=3.10"
license = "MIT"
license-files = [
    "LICENSE",
]
authors = [
    { name = "David Meijer", email = "david.meijer@wur.nl" }
]
keywords = ["alignment", "msa", "pairwise", "arbitrary-objects"]

dependencies = [
    "biopython",
    "numpy",
    "pandas",
]

classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]

[project.urls]
Homepage = "https://github.com/moltools/versalign"
Repository = "https://github.com/moltools/versalign"
Issues = "https://github.com/moltools/versalign/issues"
Documentation = "https://github.com/moltools/versalign#readme"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project.optional-dependencies]
dev = [
    "pytest",
    "ruff"
]

[tool.hatch.metadata]
allow-direct-references = true

[tool.hatch.build.targets.wheel]
packages = ["src/versalign"]
sources = ["src"]

[tool.hatch.build]
include = []

# -------------------------
# Hatch env + scripts
# -------------------------
[tool.hatch.envs.dev]
features = ["dev"]
python = "3.10"

[tool.hatch.envs.dev.scripts]
lint = "ruff check ."
fmt = "ruff format ."
test = "pytest -q"

# -------------------------
# Ruff
# -------------------------
[tool.ruff]
line-length = 120
target-version = "py310"
extend-exclude = ["build", "dist", ".venv", "venv", "typings"]

[tool.ruff.lint]
select = ["E", "F", "I", "UP", "B"]
ignore = []

[tool.ruff.lint.per-file-ignores]
"tests/data/**/*" = ["E501"]