stgeomx/DESCRIPTION at main · mkiyer/stgeomx · GitHub

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Type: Package
Package: stgeomx
Title: Nanostring GeoMx DSP RNA Data Processing and Analysis
Version: 0.1.0
Authors@R: c(
    person("Matthew", "Iyer", email = "mkiyer@med.umich.edu", role = "cre"),
    person("Madison", "Caldwell", email = "mbcald@med.umich.edu", role = "aut"),
    person("University of Michigan", role = "cph"))
Maintainer: Matthew Iyer <mkiyer@med.umich.edu>
Description: Contains functions to assist in the processing and analysis of RNA data from Nanostring GeoMx, a digital spatial profiling (DSP) technology. It has background correction and normalization methods that reduce background noise in data generated by GeoMx's analysis of tissue samples.
License: MIT + file LICENSE
Imports:
    dplyr,
    ggplot2,
    ggrepel,
    magrittr,
    pals,
    patchwork,
    pROC,
    readr,
    readxl,
    rlang,
    scales,
    stringr,
    tidyr,
    GeomxTools,
    yaml
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests:
    factoextra,
    fgsea,
    ggridges,
    knitr,
    limma,
    msigdbr,
    pheatmap,
    rmarkdown,
    testthat (>= 3.0.0),
    tidyverse,
    umap,
    writexl
VignetteBuilder: knitr
Config/testthat/edition: 3
Depends:
    R (>= 2.10)