Error at pval step #12
Description
Hey,
I'm unsure what the issue is here. I am able to run mictools null just fine, however when I need to run mictools pval I get the following error. Any idea how to fix this? Or is this something I need to take up with my systems administrator?
Error:
`Traceback (most recent call last):
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 3790, in get_loc
return self._engine.get_loc(casted_key)
File "index.pyx", line 152, in pandas._libs.index.IndexEngine.get_loc
File "index.pyx", line 181, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 7080, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 7088, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'None'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home1/nathanwi/.local/bin/mictools", line 8, in
sys.exit(cli())
File "/home1/nathanwi/.local/lib/python3.9/site-packages/click/core.py", line 1157, in call
return self.main(*args, **kwargs)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/click/core.py", line 1078, in main
rv = self.invoke(ctx)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/click/core.py", line 1688, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home1/nathanwi/.local/lib/python3.9/site-packages/click/core.py", line 1434, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/click/core.py", line 783, in invoke
return __callback(*args, **kwargs)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/scripts/mictools_cmd.py", line 177, in pval
mictools.pval.pval_cmd(xvars, null, output, labels, target, yvars, rowwise,
File "/home1/nathanwi/.local/lib/python3.9/site-packages/mictools/pval.py", line 145, in pval_cmd
obs_dist, obs, pval = compute_pval(X=X,
File "/home1/nathanwi/.local/lib/python3.9/site-packages/mictools/pval.py", line 96, in compute_pval
null_dist_cl = null_dist.loc[cl]
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexing.py", line 1153, in getitem
return self._getitem_axis(maybe_callable, axis=axis)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexing.py", line 1393, in _getitem_axis
return self._get_label(key, axis=axis)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexing.py", line 1343, in _get_label
return self.obj.xs(label, axis=axis)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/generic.py", line 4228, in xs
loc, new_index = index._get_loc_level(key, level=0)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexes/multi.py", line 3175, in _get_loc_level
indexer = self._get_level_indexer(key, level=level)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexes/multi.py", line 3276, in _get_level_indexer
idx = self._get_loc_single_level_index(level_index, key)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexes/multi.py", line 2865, in _get_loc_single_level_index
return level_index.get_loc(key)
File "/home1/nathanwi/.local/lib/python3.9/site-packages/pandas/core/indexes/base.py", line 3797, in get_loc
raise KeyError(key) from err
KeyError: 'None'
`