MA.config

#!/bin/sh

#
# Program: MA.config
#
# Purpose:
#
#   Configuration file for Adult Mouse Anatomy Load
#

cd `dirname $0` 

RUNTIME_DIR="${DATALOADSOUTPUT}/mgi/vocload/runTimeMA"
ARCHIVE_DIR="${DATALOADSOUTPUT}/mgi/vocload/archiveMA"

export RUNTIME_DIR
export ARCHIVE_DIR

OBO_FILE="${RUNTIME_DIR}/adult_mouse_anatomy.obo"
OBO_FILE_VERSION="1.2"
export OBO_FILE
export OBO_FILE_VERSION

# This variable will let the loadTerm module know that it should expect to
# find a synonym type column in the Termfile.
#
USE_SYNONYM_TYPE=1
export USE_SYNONYM_TYPE

RCD_FILE="MA.rcd"
export RCD_FILE

case `uname -n` in
bhmgiapp01) MAINTAINER="mgiadmin terry.hayamizu@jax.org";;
*) MAINTAINER="$USER";;
esac
export MAINTAINER

# vocabulary attributes:

VOCAB_NAME="Adult Mouse Anatomy"		# name of vocabulary (VOC_Vocab.name)
VOCAB_COMMENT_KEY=1000  # name of note types for comments
ACC_PREFIX="MA"		# acc ID prefix
JNUM="J:81861"		# reference for this vocabulary
IS_SIMPLE=0		# structured vocabulary; should be a .rcd file
IS_PRIVATE=0		# acc IDs are public
LOGICALDB_KEY=42	# ACC_LogicalDB._LogicalDB_key
ANNOT_TYPE_KEY=0        # VOC_AnnotType._AnnotType_key; don't report annotations
                        # to newly obsoleted terms
MGITYPE=13		 # ACC_MGIType._MGIType_key
DAG_ROOT_ID="MA:0000001"

export VOCAB_NAME
export VOCAB_COMMENT_KEY
export ACC_PREFIX
export JNUM
export IS_SIMPLE
export IS_PRIVATE
export LOGICALDB_KEY
export ANNOT_TYPE_KEY
export MGITYPE
export DAG_ROOT_ID

TERM_FILE="${RUNTIME_DIR}/Termfile"
#DEFS_FILE="${RUNTIME_DIR}/anatomy_defs.gxd"

export TERM_FILE
#export DEFS_FILE