vocload/Install at master · mgijax/vocload · GitHub

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#!/bin/sh

cd `dirname $0`
. ./Configuration

# Compile Python Programs
echo "Compiling python programs..."
${PYTHON} -m compileall -l -f .

#
# Create the runtime files if they don't exist
#
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/OMIM ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/OMIM
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/OMIM/archive ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/OMIM/archive
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/OMIM/archive/reports
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveMA ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveMA
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeMA ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeMA
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveMP ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveMP
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeMP ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeMP
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveGO ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveGO
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeGO ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeGO
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveRV ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveRV
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeRV ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeRV
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveCL ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveCL
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeCL ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeCL
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveDO ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveDO
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeDO ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeDO
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveBiotype ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveBiotype
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveBiotype/ensembl
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveBiotype/ncbi
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeBiotype ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeBiotype
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeBiotype/ensembl
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeBiotype/ncbi
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveHPO ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveHPO
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeHPO ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeHPO
fi

if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/archiveGlyGen ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/archiveGlyGen
fi
if [ ! -d ${DATALOADSOUTPUT}/mgi/vocload/runTimeGlyGen ]
then
    mkdir -p ${DATALOADSOUTPUT}/mgi/vocload/runTimeGlyGen
fi

# Set mode
echo "Setting modes..."
chmod 775 *

#
# install EMAPA/EMAPS-specific things...
#
cd emap
./Install