GlyGen.config

#!/bin/sh

#
# Program: GlyGen.config
#
# Purpose:
#
#   Configuration file for GlyGen: Computational and Informatics Resources for Glycoscience
#       see uniprotload/makeGlyGen.sh
#

cd `dirname $0` 

RUNTIME_DIR="${DATALOADSOUTPUT}/mgi/vocload/runTimeGlyGen"
ARCHIVE_DIR="${DATALOADSOUTPUT}/mgi/vocload/archiveGlyGen"

export RUNTIME_DIR
export ARCHIVE_DIR

LOAD_PROGRAM="GlyGen.py ${LOAD_PROGRAM}"
export LOAD_PROGRAM

case `uname -n` in
bhmgiapp01) MAINTAINER="mgiadmin";;
*) MAINTAINER="$USER";;
esac
export MAINTAINER

# vocabulary attributes:

VOCAB_NAME="GlyGen/UniProtKB"		# name of vocabulary (VOC_Vocab.name)
VOCAB_COMMENT_KEY=0     # name of note types for comments
JNUM="J:345062"		# reference for this vocabulary
IS_SIMPLE=1		# structured vocabulary
IS_PRIVATE=0		# acc IDs are public LOGICALDB_KEY
LOGICALDB_KEY=233       # ACC_LogicalDB._LogicalDB_key
ANNOT_TYPE_KEY=1030     # VOC_AnnotType._AnnotType_key; report annotations to newly obsoleted terms

export VOCAB_NAME
export VOCAB_COMMENT_KEY
export JNUM
export IS_SIMPLE
export IS_PRIVATE
export LOGICALDB_KEY
export ANNOT_TYPE_KEY

GLYGEN_FILE="/data/downloads/data.glygen.org/ln2data/releases/data/current/reviewed/protein_glygen_mgi_xref_mapping.tsv"
DATA_FILE="${RUNTIME_DIR}/GlyGen.tab"
TERM_FILE="${RUNTIME_DIR}/Termfile"
DAG_ROOT_ID=""

export GLYGEN_FILE
export DATA_FILE
export TERM_FILE
export DAG_ROOT_ID