vocload/DOindex.html at master · mgijax/vocload · GitHub

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<HTML><HEADER>
<body bgcolor="#ffffff" link="#006666" vlink="#666666">
<TITLE>Disease Ontology (DO) Vocabulary Load Data and Logs</TITLE>
</HEADER>
<BODY>
<CENTER>
<H2>DO Vocabulary Load (vocload) Data, Runtime Files, Reports, and Log Files</H2>
</CENTER>

<H3>Inputs</H3>
<UL>
<LI><A HREF="/data/downloads/raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/master/src/ontology/">download directory</A> - original downloaded files
</UL>

<H3>Config</H3>
<UL>
<LI><A HREF="http://prodwww.informatics.jax.org/usrlocalmgi/live/dataload/vocload/CL.config">CL.config</A>
<LI><A HREF="http://prodwww.informatics.jax.org/usrlocalmgi/live/dataload/vocload/CL.rcd">CL.rcd</A>
</UL>

<H3>Reports</H3>
<UL>
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/discrepancy.html">discrepancy.html</A> - Curator Report
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/dagDiscrepancy.html">dagDiscrepancy.html</A> - DAG Discrepancy Report
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/validationLog.txt">validationLog.txt</A> - Check invalid namespace
</UL>

<H3>Outputs</H3>
<UL>
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/fullLog.txt">fullLog.txt</A> - Job Stream log
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/log.txt">log.txt</A> - Diagnostic log
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/Termfile">Termfile</A> - File generated by vocload containing all the terms being processed.
<LI><A HREF="/data/loads/mgi/vocload/runTimeDO/"><B>All available run-time files</B></A> - All files located in the run-time directory.
</UL>

<H3>Documentation</H3>
<UL>
<LI><A HREF="http://mgiwiki/mediawiki/index.php/sw:Vocload#Disease_Ontology_.28DO.29_Load">Wiki page</A>
</UL>