CL.config

#!/bin/sh

#
# Program: CL.config
#
# Purpose:
#
#   Configuration file for CL load
#

cd `dirname $0` 

RUNTIME_DIR="${DATALOADSOUTPUT}/mgi/vocload/runTimeCL"
ARCHIVE_DIR="${DATALOADSOUTPUT}/mgi/vocload/archiveCL"
DATA_DIR="/data/downloads/purl.obolibrary.org/obo/cl"
export RUNTIME_DIR
export ARCHIVE_DIR
export DATA_DIR

TERM_FILE="${RUNTIME_DIR}/Termfile"
OBO_FILE="${DATA_DIR}/cl-basic.obo"
OBO_FILE_VERSION="1.2"
export TERM_FILE
export OBO_FILE
export OBO_FILE_VERSION

# This variable will let the loadTerm module know that it should expect to
# find a synonym type column in the Termfile.
#
USE_SYNONYM_TYPE=1
export USE_SYNONYM_TYPE

LOAD_PROGRAM="${LOAD_PROGRAM}"
RCD_FILE="CL.rcd"
export LOAD_PROGRAM
export RCD_FILE

case `uname -n` in
bhmgiapp01) MAINTAINER="mgiadmin";;
*) MAINTAINER="$USER";;
esac
export MAINTAINER

# vocabulary attributes:

VOCAB_NAME="Cell Ontology" # name of vocabulary (VOC_Vocab.name)
VOCAB_COMMENT_KEY=1000   # name of note types for comments
ACC_PREFIX="CL"		 # acc ID prefix
JNUM="J:224070"		 # reference for this vocabulary
IS_SIMPLE=0		 # structured vocabulary; should be a .rcd file
IS_PRIVATE=0		 # acc IDs are public
LOGICALDB_KEY=173
ANNOT_TYPE_KEY=0      	 # VOC_AnnotType._AnnotType_key;don't report annotations
MGITYPE=13		 # ACC_MGIType._MGIType_key
DAG_ROOT_ID="CL:0000000" # CL ID of root node which is referfed to in multiple files

export VOCAB_NAME
export VOCAB_COMMENT_KEY
export ACC_PREFIX
export JNUM
export IS_SIMPLE
export IS_PRIVATE
export LOGICALDB_KEY
export ANNOT_TYPE_KEY
export MGITYPE
export DAG_ROOT_ID