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TAG: qcreports_db-6-0-28-1
DATE: 04/16/2026
STAFF: lec
wts2-1842/Papers requiring Images report lists journal in 2 sections
modified: weekly/GXD_Images.py
TAG: qcreports_db-6-0-27-9
DATE: 04/08/2026
STAFF: lec
wts2-1838/Invalid MGI ids used in assay and specimen notes
new file: monthly/GXD_InvalidMGIId.py
modified: qcr.shtml
TAG: qcreports_db-6-0-27-8
DATE: 03/30/2026
STAFF: lec
wts2-1828/Search by strain name: Multiple strains not working properly
modified: pwi/PRB_StrainNomenCheck.py
TAG: qcreports_db-6-0-27-7
DATE: 03/10/2026
STAFF: pf
wts2-1391/HP-MP Lexical Matches; adding link to report from qcr.shtml
TAG: qcreports_db-6-0-27-6
DATE: 02/26/2026
STAFF: lec
wts2-1813/Report of Repostory strains: total associated publication numbers and total strains published
new file: weekly/PRB_Strain_Repository.py
TAG: qcreports_db-6-0-27-5
DATE: 02/20/2026
STAFF: lec
wts2-1808/add more custom ordering to HT custom reports
modified: GXD_HTExperimentByNote.py
modified: GXD_HTRawSampleByKey.py
modified: GXD_HTRawSampleByKey2.py
modified: GXD_HTRawSampleByValue.py
modified: GXD_HTRawSampleByValue2.py
TAG: qcreports_db-6-0-27-4
DATE: 02/16/2026
STAFF: lec
wts2-1801/Cell Press & Springer Nature copyright entries & images QC
modified: weekly/GXD_Images.py
TAG: qcreports_db-6-0-27-3
DATE: 02/05/2026
STAFF: lec
wts2-1798/sprt-215/GXD HT Raw Sample Key Search 2
new file: pwi/GXD_HTRawSampleByKey2.py
modified: pwi/pwireports.txt
TAG: qcreports_db-6-0-27-2
DATE: 02/03/2026
STAFF: lec
wts2-1795/sprt-208/GXD Index Custom reports small issue
wts2-1794/sprt-209/Custom report for creative commons use
wts2-1796/sprt-210/All Alleles
modified: GXD_IndexOverview.py
new file: GXD_ImageNeedCreativeCommons.py
modified: pwireports.txt
TAG: qcreports_db-6-0-27-1
DATE: 01/15/2026
STAFF: lec
wts2-1780/Move gxd_antigen info to gxd_antibody
TAG: qcreports_db-6-0-26-6
TAG: qcreports_db-6-0-26-5
DATE: 12/16/2025
STAFF: lec
wts2-1778/sprt-161/Remove Obsolete Public, QC Reports
deleted: mgd/PRB_StrainJAX3.py
deleted: monthly/GXD_NotRouted.py
deleted: weekly/BIB_COVRefTagCounts.py
deleted: weekly/BIB_Covid.py
TAG: qcreports_db-6-0-26-4
DATE: 12/12/2025
STAFF: lec
wts2-1771/sprt-153/MGI GPI missing GCRPs as cross reference
run from reports_db/daily/GO_gpi.py
TAG: qcreports_db-6-0-26-3
DATE: 07/22/2025
STAFF: lec
deleted: mgd/GXD_HTRNASeq.py
modified: mgd/GXD_HTOverview.py
modified: qcr.shtml
TAG: qcreports_db-6-0-26-2
DATE: 07/11/2025
STAFF: lec
modified: mgd/GXD_SameStructure.py
modified: qcr.shtml
TAG: qcreports_db-6-0-26-1
DATE: 07/08/2025
STAFF: lec
wts2-1697/e4g-310/Display alleles associated with a strain in repository ID and strain name custom reports
modified: PRB_StrainNomenCheck.py
modified: PRB_StrainRepoCheck.py
TAG: qcreports_db-6-0-25-30
DATE: 07/07/2025
STAFF: lec
wts2-1695/e4g-304/tweak to GXD HT Experiment Partially Reviewed Papers custom report
modified: GXD_HTExperimentPMID.py
modified: pwireports.txt
TAG: qcreports_db-6-0-25-29
DATE: 06/30/2025
STAFF: lec
wts2-1691/e4g-302/produce on demand list of HT experiments selected to be curated
wts2-1692/e4g-303/list of HT experiments selected to be curated with PMIDs
new file: pwi/GXD_HTExperimentToDo.py
new file: pwi/GXD_HTExperimentToDoPMID.py
modified: pwi/pwireports.txt
TAG: qcreports_db-6-0-25-28
TAG: qcreports_db-6-0-25-27
DATE: 06/25/2025
STAFF: lec
wts2-1689/e4g-298/have GXDHT litriage status reflect HT Index curation status = done
modified: qcr.shtml
new file: mgd/BIB_CurationStatusMismatch_GXD.sql
TAG: qcreports_db-6-0-25-26
TAG: qcreports_db-6-0-25-25
DATE: 06/17/2025
STAFF: lec
undo
remove GXD_Triage archive
modified: qcr.shtml
modified: qcweekly_reports.csh
TAG: qcreports_db-6-0-25-24
DATE: 06/03/2025
STAFF: lec
wts2-1673/how many alleles sold by Jax are used to annotated GXDHT_Samples?
wts2-1675/which alleles are used to annotate GXDHT_Samples?
new file: GXD_HTSampleAlleles.py
modified: pwireports.txt
TAG: qcreports_db-6-0-25-23
DATE: 06/03/2025
wts2-1674/e4g-278/Add Creative Commons y/n to GXD Index Overview & Uber Custom Reports
modified: GXD_IndexOverview.py
STAFF: lec
TAG: qcreports_db-6-0-25-22
DATE: 05/29/2025
STAFF: lec
wts2-1671/e4g-273/GXD Papers Requiring Images QC tweak
modified: GXD_Images.py
TAG: qcreports_db-6-0-25-21
DATE: 05/14/2025
STAFF: lec
e4g-244/Add RNA-Seq Type column to the GXD_HTOverview QC report
modified: mgd/GXD_HTOverview.py
TAG: qcreports_db-6-0-25-20
DATE: 05/13/2025
STAFF: lec
wts2-1663/e4g-255/add confidence value to All GXD HT Experiments QC
modified: mgd/GXD_HTOverview.py
TAG: qcreports_db-6-0-25-19
DATE: 05/07/2025
STAFF: lec
wts2-1655/e4g-252/Enhance QC report MRK_GmNoGeneModel.sql.rpt
new file: MRK_GmNoGeneModel.py
deleted: MRK_GmNoGeneModel.sql
TAG: qcreports_db-6-0-25-18
TAG: qcreports_db-6-0-25-17
TAG: qcreports_db-6-0-25-16
TAG: qcreports_db-6-0-25-15
DATE: 05/07/2025
STAFF: lec
wts2-1654/e4g-246/Karen Christie
wts2-1658/e4g-249/Meiyee Law
modified: qcr.shtml
update mgi_user set _userstatus_key = 316351 where _user_key in (1525,1530);
TAG: qcreports_db-6-0-25-14
DATE: 04/22/2025
STAFF: pf
modified: mgd/GXD_SameStructure.py
TAG: qcreports_db-6-0-25-13
DATE: 03/30/2025
STAFF: lec
wts2-1628/e4g-189/remove various recombinase QC reports
TAG: qcreports_db-6-0-25-12
TAG: qcreports_db-6-0-25-11
DATE: 03/20/2025
STAFF: lec
wts2-1832/e4g-199/modify GXD HT Experiment Partially Reviewed Papers to include Experiment Type = Not Resolved
modified: pwi/GXD_HTExperimentPMID.py
modified: pwi/pwireports.txt
TAG: qcreports_db-6-0-25-10
TAG: qcreports_db-6-0-25-9
TAG: qcreports_db-6-0-25-8
DATE: 03/18/2025
STAFF: lec
wts2-1628/e4g-189/remove various recombinase QC reports
wts2-1627/e4g-190/modify Alleles report 22-Review for AP:NewAlleleNomenclature tag
wts2-1626/e4g-191/New QC: Papers in public MGI for genes with no MP annotations
deleted: mgd/RECOMB_ChildExpNotParent.py
deleted: mgd/RECOMB_ExpPresNotPres.py
deleted: mgd/RECOMB_GenotypeHemi.sql
deleted: mgd/RECOMB_NotInCache.sql
deleted: mgd/RECOMB_SameStructure.py
deleted: mgd/RECOMB_SpecNoAge.sql
deleted: mgd/RECOMB_SpecTheiler.sql
deleted: mgd/RECOMB_SpecTheilerAge.py
deleted: monthly/RECOMB_Reporter.sql
deleted: monthly/RECOMB_ReporterCheck.py
new file: mgd/ALL_PM2GeneNoMP2.py
modified: qcgxd_reports.csh
modified: qcr.shtml
modified: weekly/GXD_Images.py
modified: weekly/GXD_LackingImages.py
TAG: qcreports_db-6-0-25-7
DATE: 03/14/2025
STAFF: lec
wts2-1624/e4g-186/add (last) Modified By to some GXD QCs
modified: mgd/GXD_ChildExpNotParent.py
modified: mgd/GXD_ExpPresNotPres.py
modified: mgd/GXD_ImageUnused.sql
modified: mgd/GXD_ProbeAntibody.sql
modified: mgd/GXD_SameStructure.py
modified: mgd/GXD_SpecNoAge.sql
modified: mgd/GXD_SpecTheiler.sql
modified: mgd/GXD_SpecTheilerAge.py
modified: monthly/GXD_KnockInGene.sql
modified: weekly/GXD_GenotypeNA.sql
TAG: qcreports_db-6-0-25-6
DATE: 03/05/2025
STAFF: lec
wts2-1621/e4g-181/catching gel row errors that cause the front end load to fail
new file: weekly/GXD_GelRowsWithNoBand.sql
TAG: qcreports_db-6-0-25-4
DATE: 02/28/2025
STAFF: lec
wts2-1617/e4g-163/Remove 3 QC reports no longer being used
modified: qcr.shtml
deleted: weekly/TAL_check_superscript.py
deleted: weekly/TAL_dupe_allele.py
deleted: weekly/TAL_multiple_project_ids.py
TAG: qcreports_db-6-0-25-3
TAG: qcreports_db-6-0-25-2
TAG: qcreports_db-6-0-25-1
DATE: 02/20/2025
STAFF: lec
wts2-1600/e4g-115/Marker Coordinate Load changes
# modified: weekly/MRK_C4AM_GeneModel.py
TAG: qcreports_db-6-0-24-16
DATE: 01/16/2025
STAFF: liangh
wts2-1599/e4g-113/Do PMID search to find unevaluated experiments associated with papers...
# modified: pwi/pwireports.txt
# new file: pwi/GXD_HTExperimentPMID.py
TAG: qcreports_db-6-0-24-15
DATE: 11/19/2024
STAFF: lec
mirror_wget/bhmgiimsr01.jax.org.imsr_allStrains -> bhmgiimsr02lp.jax.org issue
# modified: Configuration.default
TAG: qcreports_db-6-0-24-14
DATE: 11/04/2024
STAFF: lec
wts2-1539/e4g-57/GXD RNA-Seq Type/Schema/Migration
# modified: pwi/GXD_HTSampleAnnotations.py
# new file: mgd/GXD_HTSampleNoRNAType.py
TAG: qcreports_db-6-0-24-13
DATE: 10/29/2024
STAFF: lec
wts2-1571/e4g-54/tweak WF_SupplementalData.rpt so that it excludes gxdht only papers
# modified: mgd/WF_SupplementalData.py
TAG: qcreports_db-6-0-24-13
TAG: qcreports_db-6-0-24-12
TAG: qcreports_db-6-0-24-11
TAG: qcreports_db-6-0-24-10
TAG: qcreports_db-6-0-24-9
TAG: qcreports_db-6-0-24-8
DATE: 10/25/2024
STAFF: lec
wts2-1565/e4g-39/GXD HT: Missing PMIDs
# new file: mgd/GXD_HTPubMed.py
TAG: qcreports_db-6-0-24-7
DATE: 10/22/2024
STAFF: lec
wts2-1567/e4g-42/change sort order of custom report: GXD HT Experiment notes displayed to the public
# modified: pwi/GXD_HTExperimentCuratedNote.py
TAG: qcreports_db-6-0-24-6
DATE: 10/08/2024
STAFF: lec
wts2-1563/e4g-29/tweak to existing Unused image panes from full coded references QC (GXD #8)
# modified: mgd/GXD_ImagesUnused.py
TAG: qcreports_db-6-0-24-5
DATE: 08/28/2024
STAFF: lec
wts2-1377/fl2-960/QC reports for MP-HP match tool
# new file: weekly/VOC_OntologyExactMatch.py
TAG: qcreports_db-6-0-24-4
DATE: 08/26/2024
STAFF: lec
wts2-1541/fl2-957/obsoletes showing in MP Ontology terms added in the last week report
# modified: weekly/VOC_MPNewTerms.py
TAG: qcreports_db-6-0-24-3
DATE: 08/19/2024
STAFF: lec
wts2-1536/fl2-950/QC report/GXD HT missing annotations to RNA seq experiment variants
# new file: mgd/GXD_HTRNASeq.py
TAG: qcreports_db-6-0-24-2
DATE: 07/12/2024
STAFF: lec
wts2-1521/fl2-924/Strain Check by Strain Repository ID; make case insensitive
# modified: PRB_StrainRepoCheck.py
TAG: qcreports_db-6-0-24-1
TAG: qcreports_db-6-0-23-29
DATE: 07/10/2024
STAFF: jer
wts2-1486/fl2-911 Don't display Reset button unless there is a form.
wts2-1486/fl2-911 Enable file upload. Required major rewrite.
TAG: qcreports_db-6-0-23-28
DATE: 07/02/2024
STAFF: lec
wts2-1512/fl2-913/emageload retire/qcr.shtml
TAG: qcreports_db-6-0-23-27
DATE: 06/27/2024
STAFF: lec
wts2-1486/fix reoombinase bug/GXD_IndexOverviewUber.py
TAG: qcreports_db-6-0-23-26
TAG: qcreports_db-6-0-23-25
DATE: 06/25/2024
STAFF: lec
fixed vocload; should use ldb=15 not ldb=191
wts2-1399/fl2-905/OMIM to MIM change broke 2 DO reports
# modified: VOC_OMIMDOMult.py
# modified: VOC_OMIMDOObsolete.py
TAG: qcreports_db-6-0-23-24
DATE: 06/12/2024
STAFF: lec
wts2-1492/fl2-861/change the run frequency of some GXD QC reports and rearrange list to reflect this new run frequency
# renamed: weekly/GXD_DupPrimers.sql -> mgd/GXD_DupPrimers.sql
# renamed: mgd/GXD_FullCodeable.py -> weekly/GXD_FullCodeable.py
# renamed: mgd/GXD_Images.py -> weekly/GXD_Images.py
# renamed: mgd/GXD_LackingImages.py -> weekly/GXD_LackingImages.py
# renamed: mgd/GXD_WithdrawnMarker.py -> weekly/GXD_WithdrawnMarker.py
TAG: qcreports_db-6-0-23-23
DATE: 06/06/2024
STAFF: lec
wts2-1483/fl2-894/more exclusions for References QC 5. J#s missing PDF’s
# modified: monthly/BIB_MissingPDFs.sql
TAG: qcreports_db-6-0-23-22
DATE: 05/29/2024
STAFF: lec
wts2-1480/fl2-876/move BIB Missing DOI from weekly to daily
# renamed: weekly/BIB_MissingDOI.sql -> mgd/BIB_MissingDOI.sql
TAG: qcreports_db-6-0-23-21
DATE: 05/28/2024
STAFF: lec
wts2-1403/fl2-732/Change of OMIM prefix to MIM in MGI: back end
TAG: qcreports_db-6-0-23-20
TAG: qcreports_db-6-0-23-19
DATE: 04/29/2024
STAFF: lec,jer
wts2-???/fl2-832/Move TR12977 custom report into qcreports_db/pwi
wts2-???/fl2-832/Move TR12977 custom report into qcreports_db/pwi - limit displayed rows to 1000.
TAG: qcreports_db-6-0-23-18
DATE: 04/02/2024
STAFF: lec
wts2-1155/GOC taking over GOA mouse, GOA human, etc.
# deleted: VOC_GOObsolete.py
wts2-1155/GOC taking over GOA mouse, GOA human, etc.
TAG: qcreports_db-6-0-23-17
DATE: 04/02/2024
STAFF: lec
wts2-1453/fl2-811/add curation state to existing custom report
TAG: qcreports_db-6-0-23-16
TAG: qcreports_db-6-0-23-15
DATE: 03/29/2024
STAFF: lec
wts2-1155/GOC taking over GOA mouse, GOA human, etc.
wts2-1450/Custom Report for GXD workflow tag
# new file: GXD_PriorityTags.py
mgd/GO_Combined_Report.py
mgd/GO_MGIGAF.py
mgd/GO_stats.py
mgd/GO_MGIGAF.py
monthly/MRK_GOSymbolChange.sql
qcgo_reports.csh
qcr.shtml
qcweekly_reports.csh
TAG: qcreports_db-6-0-23-14
DATE: 03/25/2024
STAFF: lec
wts2-1447/Lit triage: journals x year of publication (QC report to track journal usage in the MasterBib)
wts2-1448/Lit triage: journals x curatorial group (QC reports to track journal usage by group)
wts2-1449/Lit triage: journals' keep/discard numbers
# new file: monthly/BIB_JournalByYear.py
# new file: monthly/BIB_JournalByGroupYear.py
# new file: monthly/BIB_JournalByYearKD.py
TAG: qcreports_db-6-0-23-13
TAG: qcreports_db-6-0-23-12
DATE: 03/19/2024
STAFF: lec
wts2-1441/fl3-787/custom report listing HT Experiment Notes for experiments whose curation status = done
TAG: qcreports_db-6-0-23-11
TAG: qcreports_db-6-0-23-10
DATE: 03/14/2024
STAFF: lec
wts2-1439/fl2-784/HT/remove Raw Sample Count from PWI & QC
undo:
wts2-1430/fl2-778/add column to existing GXD_HTOverview
TAG: qcreports_db-6-0-23-9
DATE: 03/13/2024
STAFF: lec
wts2-1437/fl2-780/missing QC report 'New PubMed2Gene References for markers with no literature MP annot'
weird/looks ok on master/qcr.shtml
TAG: qcreports_db-6-0-23-8
DATE: 03/12/2024
STAFF: lec
wts2-1430/fl2-778/add column to existing GXD_HTOverview
TAG: qcreports_db-6-0-23-7
TAG: qcreports_db-6-0-23-6
DATE: 03/11/2024
STAFF: lec
wts2-1429/fl2-777/re-add weekly/BIB_Duplicates.sql
TAG: qcreports_db-6-0-23-5
TAG: qcreports_db-6-0-23-4
DATE: 03/1/2024
STAFF: lec
wts2-1419/fl2-761/Alicia Valenzuela QC, etc.
wts2-1421/obsolete QC reports
# deleted: mgd/PRB_Strain5.py
# deleted: mgd/PRB_Strain6.py
# deleted: mgd/PRB_StrainDup.sql
# deleted: mgd/PRB_StrainTrans.sql
# deleted: mgd/PRB_Strain_MultNoAlleles.sql
# deleted: mgd/PRB_Strain_NoAlleles1.sql
# deleted: mgd/PRB_Strain_NomenSyns.py
# deleted: mgd/PRB_Strain_OtherSyns.py
# deleted: mgd/PRB_Strain_SingleNoAlleles1.sql
# deleted: mgd/PRB_Strain_SingleNoAlleles2.sql
# deleted: mgd/PRB_Strain_Standard.sql
# deleted: weekly/BIB_Duplicates.sql
# deleted: weekly/GO_CurationMetrics.sql
# deleted: monthly/BIB_Dagger.sql
TAG: qcreports_db-6-0-23-3
DATE: 02/27/2024
STAFF: lec
wts2-1412/fl2-758/retire WF_GXD_secondary.rpt QC
# deleted: weekly/WF_GXD_secondary.py
TAG: qcreports_db-6-0-23-2
DATE: 02/01/2024
STAFF: lec
wts2-1382/fl2-717/add relevance
wts2-1381/fl2-721/New QC report: New PubMed2Gene References for markers with no literature MP annot.
# new file: mgd/ALL_PM2GeneNoMP.py
# modified: mgd/GO_PM2GeneRefsNotInMGI.py
TAG: qcreports_db-6-0-23-1
DATE: 01/31/2024
STAFF: lec
# modified: mgd/VOC_InvalidProperties.py
fix bug
TAG: qcreports_db-6-0-22-76
DATE: 01/30/2024
STAFF: lec
wts2-1390/fl2-712/Custom report for batch allele retrieval
(qcreports/pwi/ALL_CheckByCreationDate.py)
TAG: qcreports_db-6-0-22-75
DATE: 12/05/2023
STAFF: sc
New report: weekly/HOM_MouseNoHuman.py
TAG: qcreports_db-6-0-22-74
DATE: 11/30/2023
STAFF: dbm
qcr.shtml: remove link to arrayexpload (retired)
TAG: qcreports_db-6-0-22-73
DATE: 11/28/2023
STAFF: lec
wts2-1343/fl2-653/Custom GXD report for highlight
TAG: qcreports_db-6-0-22-72
DATE: 11/21/2023
STAFF: lec
wts2-1342/fl2-649/one more for the PRB_Reference.sql.rpt/rename it
TAG: qcreports_db-6-0-22-70
DATE: 11/14/2023
STAFF: dbm
qcr.shtml: remove link to genmapload (retired)
TAG: qcreports_db-6-0-22-71
TAG: qcreports_db-6-0-22-69
DATE: 11/13/2023
STAFF: lec
wts2-1331/fl2-637/Update Images QC
# modified: mgd/GXD_Images.py
TAG: qcreports_db-6-0-22-68
DATE: 11/13/2023
STAFF: lec
wts2-1330/fl2-636/Duplicate RNAscope Probes (Mm-%)
# modified: monthly/PRB_Reference.sql
TAG: qcreports_db-6-0-22-67
TAG: qcreports_db-6-0-22-66
DATE: 11/09/2023
STAFF: lec
wts2-1328/fl2-633/Gene Expr Patterns papers to full code
# modified: weekly/GXD_FullCode.py
TAG: qcreports_db-6-0-22-65
DATE: 11/03/2023
STAFF: lec
wts2-1321/fl2-616/add PMID to Invalid Inferred From Values report
# modified: mgd/VOC_InvalidInferred.py
TAG: qcreports_db-6-0-22-64
DATE: 11/01/2023
STAFF: lec
wts2-1315/fl2-612/GXD HT Raw Sample Value Search: return by experiment (not sample)
# new file: GXD_HTRawSampleByValue2.py
# modified: pwireports.txt
TAG: qcreports_db-6-0-22-63
DATE: 10/25/2023
STAFF: dbm
wts2-1313/fl2-602/add sunday/inferred from linkout errors to GO/QC
TAG: qcreports_db-6-0-22-62
DATE: 10/19/2023
STAFF: dbm
qcr.shtml: remove link to TAL (retired)
TAG: qcreports_db-6-0-22-61
DATE: 10/17/2023
STAFF: sc
Fixed bug in MRK_Withdrawn.sql - never updated when MRK_Status terms
were moved to VOC_Term
TAG: qcreports_db-6-0-22-60
TAG: qcreports_db-6-0-22-59
DATE: 10/03/2023
STAFF: sc
fl2-568/move reports from targetedalleleload
1. weekly/TAL_check_superscript.py
2. weekly/TAL_dupe_allele.py
3. weekly/TAL_multiple_project_ids.py
4. added to qcr.shtml
TAG: qcreports_db-6-0-22-58
TAG: qcreports_db-6-0-22-57
DATE: 09/22/2023
STAFF: lec
wts2-1286/fl2-554/change GXD #39 and #40 from monthly runs to weekly
wts2-1285/tweak to two recent QCs
GXD_FullCodeableLargeScale.py
GXD_FullCodeableAdultSpecs.py
TAG: qcreports_db-6-0-22-56
DATE: 09/21/2023
STAFF: lec
wts2-1281/fl2-544/Add a column to the results of Strains report #14
mgd/MLP_Nomenclature.sql
TAG: qcreports_db-6-0-22-55
DATE: 09/06/2023
STAFF: lec
wts2-1268/fl2503/2 new GXD QC reports for fullcoding priority
# new file: monthly/GXD_FullCodeableLargeScale.py
# new file: monthly/GXD_FullCodeableAdultSpecs.py
TAG: qcreports_db-6-0-22-54
DATE: 07/11/2023
STAFF: lec
wts2-1228/fl2-437/GXD HT Raw Sample Key/Value Search--preferential return of predicted yes/no
GXD_HTRawSampleByKey.py,GXD_HTRawSampleByValue.py
TAG: qcreports_db-6-0-22-53
DATE: 06/27/2023
STAFF: jer
wts2-1177/fl2-412 Add fields to extracted text custom report.
TAG: qcreports_db-6-0-22-52
DATE: 06/14/2023
STAFF: lec
wts2-1210/fl2-411/GXD QC: add another excluded assay type
TAG: qcreports_db-6-0-22-51
TAG: qcreports_db-6-0-22-50
DATE: 06/12/2023
STAFF: lec
wts2-1208/fl2-402/add PMID id to GXD HT Experiment Note Search
pwi/GXD_HTExperimentByNote.py
TAG: qcreports_db-6-0-22-49
DATE: 06/08/2023
STAFF: jer
wts2-1195/fl2-399/Custom report alleles with "mut =" in Nomenclature note
TAG: qcreports_db-6-0-22-48
DATE: 06/08/2023
STAFF: dbm
wts2-1201/fl2-400/Various QC report changes (retire, change frequency, reorder)
TAG: qcreports_db-6-0-22-47
DATE: 05/30/2023
STAFF: lec
wts2-1194/fl2-385/Adding columns to Strain Check by Strain Nomenclature report
PRB_StrainNomenCheck.py
TAG: qcreports_db-6-0-22-46
DATE: 05/24/2023
STAFF: lec
wts2-1187/fl2-362/Missing driver QC report
wts2-1190/fl2-465/new custom report: GXD Assay Note Search
TAG: qcreports_db-6-0-22-45
TAG: qcreports_db-6-0-22-44
DATE: 05/23/2023
STAFF: lec
wts2-1185/fl2-355/Variant Curation Activity Report
TAG: qcreports_db-6-0-22-43
DATE: 05/12/2023
STAFF: lec
wts2-1132/fl2-343/Define MGI staff contacts for unassigned Sequence Group QC reports
TAG: qcreports_db-6-0-22-42
DATE: 05/12/2023
STAFF: lec
wts2-1115/fl2-206/QC reports/wiki/etc. changes due to retiring in MGI (part 2)
TAG: qcreports_db-6-0-22-41
DATE: 05/09/2023
STAFF: lec
wts2-1171/fl2-335/new custom report: GXD Specimen Note Search
TAG: qcreports_db-6-0-22-40
DATE: 04/26/2023
STAFF: sc
wts2-1050/Florida Too Project
TAG: qcreports_db-6-0-22-39
DATE: 04/11/2023
STAFF: dbm
fl2-278/Clean up bhmgiapp14ld (scrum server) /data/downloads (includes Test and Prod)
qcr.html: removed gensatload link (retired)
TAG: qcreports_db-6-0-22-38
DATE: 03/01/2023
STAFF: lec
wts2-1093/fl2-233/Missing DOI QC report
weekly/BIB_MissingDOI.sql
TAG: qcreports_db-6-0-22-37
TAG: qcreports_db-6-0-22-36
DATE: 02/28/2023
STAFF: lec
wts2-556/fl2-210/Request for additional GO QC report: under-annotated genes (TR13434)
monthly/GO_Unannotationed.py
TAG: qcreports_db-6-0-22-35
DATE: 02/22/2023
STAFF: lec
wts2-1115/fl2-178/QC reports/wiki/etc. changes due to retiring in MGI (part 1)
TAG: qcreports_db-6-0-22-34
DATE: 02/10/2023
STAFF: sc
WTS2-1114 - report of symbols with GO NOCTUA annotations that have
symbol, merger, or withdrawal, delete in the last month
TAG: qcreports_db-6-0-22-33
DATE: 02/09/2023
STAFF: lec
wts2-1097/fl2-203/add Experiments where Curation State=Done and Evaluation !=Yes
mgd/GXD_HTExpCuration.py
TAG: no tag
DATE: 02/07/2023
STAFF: lec
ok to install on production at next tag
florida too/fl2b/expresses-component
weekly/MRK_NonMouseNotInEG.py
TAG: qcreports_db-6-0-22-32
TAG: qcreports_db-6-0-22-31
DATE: 02/02/2023
STAFF: sc
Added MP HP Relationship Load and MP HPO Header mapping load to the index page
TAG: qcreports_db-6-0-22-30
DATE: 02/02/2023
STAFF: lec
wts2-1198/fl2-171/exclude cell line, deleted and certain other alleles
weekly/ALL_MolNotesNoMP.py
TAG: qcreports_db-6-0-22-29
DATE: 01/23/2022
STAFF: sc
wts2-1100/fl2-146/New custom report for extracted text
pwi/BIB_ExtractedTextByMGIIDs.py
TAG: qcreports_db-6-0-22-28
TAG: qcreports_db-6-0-22-27
DATE: 01/13/2022
STAFF: sc
wts2-1091 - weekly/ALL_NomenCheck.py
TAG: qcreports_db-6-0-22-26
DATE: 12/22/2022
STAFF: sc
WTS2-1077 add PubMed ids to HT overview report
mgd/GXD_HTOverview.py
TAG: qcreports_db-6-0-22-25
TAG: qcreports_db-6-0-22-24
TAG: qcreports_db-6-0-22-23
DATE: 12/14/2022, 12/15/2022
STAFF: lec
wts2-1073/Titles come in from pubmed that say 'dagger'"
monthly/BIB_Dagger.sql
TAG: qcreports_db-6-0-22-22
TAG: qcreports_db-6-0-22-21
TAG: qcreports_db-6-0-22-20
TAG: qcreports_db-6-0-22-19
DATE: 12/01/2022, 12/07/2022
STAFF: lec
fl2/gxd secondary triage
monthly/GXD_NotRouted.py
weekly/WF_GXD_secondary.py
TAG: qcreports_db-6-0-22-18
DATE: 11/30/2022
STAFF: lec
fl2/gxd secondary triage
weekly/WF_GXD_secondary.py
TAG: qcreports_db-6-0-22-17
DATE: 11/25/2022
STAFF: lec
wts2-1046/Move PWI/GO/Potential GO Reference Report to qcreports_db/pwi
TAG: qcreports_db-6-0-22-16
TAG: qcreports_db-6-0-22-15
TAG: qcreports_db-6-0-22-14
TAG: qcreports_db-6-0-22-13
TAG: qcreports_db-6-0-22-12
TAG: qcreports_db-6-0-22-11
TAG: qcreports_db-6-0-22-10
TAG: qcreports_db-6-0-22-9
DATE: 11/10/2022, 11/14/2022
STAFF: lec
wts2-888/SQA: PWI/Custom Reports/new pwi folder
wts2-1031/Divide data in nomen QC reports
modified: mgd/HMD_SymbolDiffs.py
TAG: qcreports_db-6-0-22-8
DATE: 11/08/2022
STAFF: lec
wts2-1031/Divide data in nomen QC reports
modified: mgd/HMD_SymbolDiffs.py
TAG: qcreports_db-6-0-22-7
DATE: 10/14/2022
STAFF: lec
wts2-1009/Additional GXD QC report for Probes
mgd/GXD_ProbeAntibody.sql
monthly/PRB_Reference.sql
TAG: qcreports_db-6-0-22-6
DATE: 10/04/2022
STAFF: lec
wts2-992/identify HT index experiments with associated PMID used by GXD in MasterBib
weekly/GXD_HTExpPubMedID.sql
TAG: qcreports_db-6-0-22-5
DATE: 09/09/2022
STAFF: lec
wts2-977/Add SynGO annotation tracking to GO stats report
TAG: qcreports_db-6-0-22-4
DATE: 09/09/2022
STAFF: lec
wts2-976/Tweaks to GO Stats report
TAG: qcreports_db-6-0-22-3
TAG: qcreports_db-6-0-22-2
TAG: qcreports_db-6-0-22-1
DATE: 08/25/2022, 08/31/2022
STAFF: lec
wts2-761/MGD db cleanup - gxd vocabs -> voc_vocab/voc_term
wts2-761/use keys for Absent/Not Applicable query
TAG: qcreports_db-6-0-21-5
TAG: qcreports_db-6-0-21-4
DATE: 07/21/2022
STAFF: sc
wts2-944 created ondemand directory
converted the WTS2-673 customSQL report to an on demand QC report:
BIB_ArticlesByYear.csh/BIB_ArticlesByYear.py
TAG: qcreports_db-6-0-21-3
TAG: qcreports_db-6-0-21-2
DATE: 07/19/2022
STAFF: sc
wts2-896/crm-306
weekly/MRK_QTLCandidateGene.py
TAG: qcreports_db-6-0-21-1
DATE: 07/18/2022
STAFF: lec
wts2-938/Non-Recombinase allele with driver gene check
RECOMB_NoDriver.py
TAG: qcreports_db-6-0-20-2
DATE: 06/30/2022
STAFF: lec
wts2-918/Tweek for reporting invalid properties
TAG: qcreports_db-6-0-20-1
DATE: 06/27/2022
STAFF: lec
wts2-791/cell type annotations to obsolete CL terms/GXD_CellLine_Obsolete.sql
TAG: qcreports_db-6-0-18-14
DATE: 05/12/2022
STAFF: sc
mgd/GXD_ChildExpNotParent.py - bug fix
WTS2-868 - something is scrambled on the GXD_ChildExpNotParent.rpt
TAG: qcreports_db-6-0-18-13
TAG: qcreports_db-6-0-18-12
DATE: 04/07/2022
STAFF: lec
fixed link to /data/loads/go/goamouse/output/pubmed.error
TAG: qcreports_db-6-0-18-11
TAG: qcreports_db-6-0-18-10
DATE: 04/06/2022
STAFF: lec
wts2-802/HT index custom & QC reports don't work with GEO primary ids
added logicaldb = 190
# modified: GXD_HTExpCuration.py
# modified: GXD_HTSampleGenotypeNA.py
# modified: GXD_HTSampleNoAge.sql
# modified: GXD_HTSampleNoStructure.py
# modified: GXD_HTSampleTheilerAge.py
wts2-792/QC for GXD & Cre: specimens/gel lanes lacking an age min/max
# modified: mgd/GXD_SpecNoAge.sql
# modified: mgd/RECOMB_SpecNoAge.sql
TAG: qcreports_db-6-0-18-9
TAG: qcreports_db-6-0-18-8
DATE: 03/23/2022
STAFF: lec
wts2-703/new Noctua -> GO Annotation pipeline
# modified: qcnightly_reports.csh
remove: mgidbmigration/tr13272/go_cam.csh
remove: weekly/PHENO_Features.py per Allele Relationship PWI
wts2-804/modify BIB_Duplicates.sql.rpt to "ignore" period at end of title
TAG: qcreports_db-6-0-18-7
TAG: qcreports_db-6-0-18-6
DATE: 02/21/2022
STAFF: lec
CHANGES:
wts2-767/mgi_notechunk/mgi_note merge
TAG: not tag
DATE: 01/31/2022
STAFF: lec
monthly/ALL_RefCounts.py; added jason.beckwith@jax.org
TAG: qcreports_db-6-0-18-5
DATE: 02/09/2020
STAFF: lec
wts2-773/Adding curator column to New Allele Report
# modified: weekly/ALL_NewAllele.py
TAG: qcreports_db-6-0-18-4
TAG: qcreports_db-6-0-18-3
TAG: qcreports_db-6-0-18-2
TAG: qcreports_db-6-0-18-1
DATE: 01/10/2022
STAFF: sc
Merge YAKS branch to trunk
lec - monthly/ALL_RefCounts.py; added jason.beckwith@jax.org
TAG: qcreports_db-6-0-17-27
TAG: qcreports_db-6-0-17-26
DATE: 12/27/2021
STAFF: lec
wts2-750/Allele report "Review for AP:NewAlleleNomenclature tag" not finding all relevant "routed" pdfs
mgd/WF_AP_NewAlleleNomenTag.py
sym link removed: weeklyGO_stats.py
TAG: qcreports_db-6-0-17-25
TAG: qcreports_db-6-0-17-24
TAG: qcreports_db-6-0-17-23
DATE: 12/20/2021, 12/21/2021
STAFF: lec
wts2-752/add all root section to GO Stats report/GO_stats.py
wts2-747/add resonsible person to Allele QC reports
wts2-746/discontinue selected 'Allele' and 'Strain' QC reports
remove:
ALL_NoMutantSentence.py
ALL_SequenceReference.sql
ALL_UncodedReference.py
ALL_NoPhenoRef.py
ALL_MCLAllele.sql
ALL_NoOrigRef.sql
GXD_OrphanGenotype.sql
WF_AP_Routed.py
BIB_StatusMismatch_AP.sql
PRB_StrainJAX8.sql
remove mmrrc piece only:
PRB_StrainJAX2.py
PRB_StrainJAX3.py
TAG: qcreports_db-6-0-17-22
DATE: 12/09/2021
STAFF: lec
wts2-739/add references = discard used in Annotations to existing MRK_BIB_Discard.py report
# deleted: mgd/MRK_BIB_Discard.py
# new file: mgd/MRK_BIB_Discard.sql
TAG: qcreports_db-6-0-17-21
DATE: 12/01/2021
STAFF: lec
wts2-735/WF_AP_Discard obsolete/removed
TAG: qcreports_db-6-0-17-20
DATE: 11/30/2021
STAFF: dbm
yaks-394/exclude recombinase reporter assays
TAG: qcreports_db-6-0-17-19
TAG: qcreports_db-6-0-17-18
TAG: qcreports_db-6-0-17-17
TAG: qcreports_db-6-0-17-16
TAG: qcreports_db-6-0-17-15
DATE: 10/29/2021
STAFF: sc
yaks-319 Cell Type QC Report - all CL terms with synonyms
new: mgd/GXD_CellType_Terms.py