Install

#!/bin/sh

# cannot execute as a symbolic link

if [ -h $0 ]; then
	echo "Cannot execute Install script as a symbolic link" >& 2
	exit 1
fi

# make sure we are in the product's directory before continuing

SCRIPT=`basename $0`
DIR=`echo $0 | sed "s/${SCRIPT}$//"`
if [ "${DIR}" != "" ]; then
	cd ${DIR}
fi

# make sure we can access configuration file

CONFIG=./Configuration

if [ ! -r ${CONFIG} ]; then
	echo "Missing ${DIR}${CONFIG} file" >& 2
	exit 1
fi

# pick up values for standard variables

TOP=`pwd`
PYTHON=`grep '^PYTHON' ${CONFIG} | awk '{print $2}'`
if [ ! -r ${PYTHON} ]; then
	echo "Cannot read python at ${PYTHON}" >& 2
	exit 1
fi

MGICONFIG=`grep '^MGICONFIG' ${CONFIG} | awk '{print $2}'`
if [ ! -r ${MGICONFIG} ]; then
	echo "Cannot find mgiconfig at ${MGICONFIG}" >& 2
	exit 1
fi

export GROUP=`grep '^GROUP' ${CONFIG} | awk '{print $2}'`
if [ "${GROUP}" = "" ]; then
	echo "Cannot find group in ${CONFIG}" >& 2
	exit 1
fi

# remove any existing python executable links, create new one

if [ ! -d ./bin ]; then
	mkdir ./bin
fi

if [ -h ./bin/python ]; then
	rm ./bin/python
fi

cd bin 
ln -s $PYTHON python
cd ${TOP}

echo "Created ./bin/python link"

if [ -h ./admin/python ]; then
	rm ./admin/python
fi

cd admin
ln -s ../bin/python python
cd ${TOP}

echo "Created ./admin/python link"

# remove any existing include directory, create and populate new one
# with links to template files

if [ -d ./www/include ]; then
	rm -rf ./www/include
fi

mkdir www/include
cd www/include

ln -s ${MGICONFIG}web/templateBodyStart.html templateBodyStart.html
ln -s ${MGICONFIG}web/templateHeadNoReset.html templateHead.html
ln -s ${MGICONFIG}web/templateBodyStop.html templateBodyStop.html

echo "MGI" > title.html

cd ${TOP}

echo "Created ./www/include/ links"

# remove old documents and recreate the mouse and rat output directories

for organism in mouse rat
do
	if [ -d www/${organism} ]; then
		rm -rf www/${organism}
	fi
	mkdir www/${organism}
	mkdir www/${organism}/docs
	echo "Created ./www/${organism}/ directory"

	cd www/${organism}
	ln -s ../include include
	cd docs
	ln -s ../../include include
	cd ${TOP}
done

# build the document for mouse and rat

./admin/doit mouse ${TOP}
./admin/doit rat ${TOP}

# finish
echo "Done" >& 2
exit 0