assemblyseqload/index.html at master · mgijax/assemblyseqload · GitHub

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<TITLE>Assembly Sequence Loads</TITLE>

<H1>NCBI: Data, Logs and QC Reports</H1>
<UL>

<H2>Assembly Sequence Load</H2>

<H4>Data</H4>
<UL>
<LI><A HREF="http://prodwww.informatics.jax.org/wts_projects/8500/8528/DataLoad/ncbi/genemodels/ncbigenemodels.txt">NCBI Gene Model Input File</A>
</UL>

<H4>Logs</H4>
<UL>
<LI><A HREF="/data/loads/assembly/ncbiseqload/logs/assemblyseqload.proc.log">Process Summary Log</A>
<LI><A HREF="/data/loads/assembly/ncbiseqload/logs/assemblyseqload.diag.log">Diagnostic Log</A>
<LI><A HREF="/data/loads/assembly/ncbiseqload/logs/assemblyseqload.cur.log">Curator Summary Log</A>
<LI><A HREF="/data/loads/assembly/ncbiseqload/logs/assemblyseqload.val.log">Data Validation Log</A>
</UL>

<H2>Association Load</H2>

<H4>Data</H4>
<UL>
<LI><A HREF="http://prodwww.informatics.jax.org/wts_projects/8500/8528/DataLoad/ncbi/assoc/NCBI_MGI_B37_association.load">NCBI/MGI Association Input File</A>
</UL>

<H4>Logs</H4>
<UL>
<LI><A HREF="/data/loads/assembly/ncbi_assocload/logs/assocload.proc.log">Process Summary Log</A>
<LI><A HREF="/data/loads/assembly/ncbi_assocload/logs/assocload.diag.log">Diagnostic Log</A>
<LI><A HREF="/data/loads/assembly/ncbi_assocload/logs/assocload.cur.log">Curator Summary Log</A>
<LI><A HREF="/data/loads/assembly/ncbi_assocload/logs/assocload.val.log">Data Validation Log</A>
</UL>

<H4>QC Reports</H4>
<UL>
<LI><A HREF="/data/loads/assembly/ncbi_assocload/reports/TargetDiscrepancy.rpt">MGI Marker Discrepancies</A>
<LI><A HREF="/data/loads/assembly/ncbi_assocload/reports/AssocDiscrepancy.rpt">NCBI Gene Model Discrepancies</A>
</UL>
</UL>

<H1>Ensembl: Data, Logs and QC Reports</H1>
<UL>

<H2>Assembly Sequence Load</H2>

<H4>Data</H4>
<UL>
<LI><A HREF="http://prodwww.informatics.jax.org/wts_projects/8500/8528/DataLoad/ensembl/genemodels/ensemblgenemodels.txt">Ensembl Gene Model Input File</A>
</UL>

<H4>Logs</H4>
<UL>
<LI><A HREF="/data/loads/assembly/ensemblseqload/logs/assemblyseqload.proc.log">Process Summary Log</A>
<LI><A HREF="/data/loads/assembly/ensemblseqload/logs/assemblyseqload.diag.log">Diagnostic Log</A>
</UL>

<H2>Association Load</H2>

<H4>Data</H4>
<UL>
<LI><A HREF="http://prodwww.informatics.jax.org/wts_projects/8500/8528/DataLoad/ensembl/assoc/Ensembl_MGI_B37_association.load">Ensembl/MGI Association Input File</A>
</UL>

<H4>Logs</H4>
<UL>
<LI><A HREF="/data/loads/assembly/ensembl_assocload/logs/assocload.proc.log">Process Summary Log</A>
<LI><A HREF="/data/loads/assembly/ensembl_assocload/logs/assocload.diag.log">Diagnostic Log</A>
</UL>

<H4>QC Reports</H4>
<UL>
<LI><A HREF="/data/loads/assembly/ensembl_assocload/reports/TargetDiscrepancy.rpt">MGI Marker Discrepancies</A>
<LI><A HREF="/data/loads/assembly/ensembl_assocload/reports/AssocDiscrepancy.rpt">Ensembl Gene Model Discrepancies</A>
</UL>
</UL>

<H1>MGP: Data, Logs and QC Reports</H1>
<UL>

<H2>Assembly Sequence Load</H2>

<H4>Data</H4>
<UL>
<LI><A HREF="/data/loads/mgi/strainmarkerload/output/gm_mgpinputfile.txt">MGP Gene Model Input File</A>
<LI><A HREF="/data/loads/mgi/strainmarkerload/output/gm_mgpbiotypefile.txt">MGP Biotype Input File</A>
</UL>

<H4>Logs</H4>
<UL>
<LI><A HREF="/data/loads/assembly/mgpseqload/logs/assemblyseqload.proc.log">Process Summary Log</A>
<LI><A HREF="/data/loads/assembly/mgpseqload/logs/assemblyseqload.diag.log">Diagnostic Log</A>
</UL>
</UL>

<H4>Output</H4>
<UL>
<LI><A HREF="/data/loads/assembly/mgpseqload/output">BCP Files</A>
</UL>

<H1>MGI B6: Data, Logs and QC Reports</H1>
<UL>

<H2>Assembly Sequence Load</H2>

<H4>Data</H4>
<UL>
<LI><A HREF="/data/loads/mgi/strainmarkerload/output/gm_b6inputfile.txt">MGP Gene Model Input File</A>
<LI><A HREF="/data/loads/mgi/strainmarkerload/output/gm_b6biotypefile.txt">MGP Biotype Input File</A>
</UL>

<H4>Logs</H4>
<UL>
<LI><A HREF="/data/loads/assembly/b6seqload/logs/assemblyseqload.proc.log">Process Summary Log</A>
<LI><A HREF="/data/loads/assembly/b6seqload/logs/assemblyseqload.diag.log">Diagnostic Log</A>
</UL>

<H4>Output</H4>
<UL>
<LI><A HREF="/data/loads/assembly/b6seqload/output">BCP Files</A>
</UL>