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Description
If you have a molecule with a diffusion constant of zero which is applied to a concentration clamp, MCell will produce the following (unhelpful) error message:
Error: Failed to parse input file
Here's an MDL that produces this error:
ITERATIONS = 1
TIME_STEP = 1e-6
DEFINE_MOLECULES { vol1 { DIFFUSION_CONSTANT_3D = 0 } }
DEFINE_SURFACE_CLASSES { Surface_Class { CLAMP_CONCENTRATION vol1; = 1e-5 } }
Plane POLYGON_LIST {
VERTEX_LIST {
[ -0.899999976158142, -0.899999976158142, 0 ]
[ 0.899999976158142, -0.899999976158142, 0 ]
[ -0.899999976158142, 0.899999976158142, 0 ]
[ 0.899999976158142, 0.899999976158142, 0 ]
}
ELEMENT_CONNECTIONS {
[ 1, 2, 0 ]
[ 1, 3, 2 ]
}
}
MODIFY_SURFACE_REGIONS { Plane[ALL] { SURFACE_CLASS = Surface_Class } }
INSTANTIATE Scene OBJECT
{
Plane OBJECT Plane {}
}
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