From 0c963c4bfaa7e715d4aa74c09aa64617e00aa855 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 3 Feb 2026 06:37:51 +0000
Subject: [PATCH 1/8] Initial plan


From bce4ce0c27006c23eaea5acc01c89ccfbb4ccffa Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 3 Feb 2026 06:41:37 +0000
Subject: [PATCH 2/8] Initial branch creation for MCP HTTP fixes

Co-authored-by: mars167 <29228178+mars167@users.noreply.github.com>
---
 package-lock.json | 838 +++++++++++++++++++++++++++-------------------
 1 file changed, 488 insertions(+), 350 deletions(-)

diff --git a/package-lock.json b/package-lock.json
index f9505a2..a63238f 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,12 +1,12 @@
 {
   "name": "@mars167/git-ai",
-  "version": "2.3.0",
+  "version": "2.4.0",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "@mars167/git-ai",
-      "version": "2.3.0",
+      "version": "2.4.0",
       "license": "MIT",
       "os": [
         "darwin",
@@ -20,7 +20,7 @@
         "@types/node": "^25.0.9",
         "apache-arrow": "18.1.0",
         "commander": "^14.0.2",
-        "cozo-lib-wasm": "^0.7.6",
+        "cozo-node": "^0.7.6",
         "fs-extra": "^11.3.3",
         "glob": "^13.0.0",
         "onnxruntime-node": "^1.19.2",
@@ -55,13 +55,12 @@
         "@lancedb/lancedb-linux-x64-gnu": "0.22.3",
         "@lancedb/lancedb-linux-x64-musl": "0.22.3",
         "@lancedb/lancedb-win32-arm64-msvc": "0.22.3",
-        "@lancedb/lancedb-win32-x64-msvc": "0.22.3",
-        "cozo-node": "^0.7.6"
+        "@lancedb/lancedb-win32-x64-msvc": "0.22.3"
       }
     },
     "node_modules/@cspotcode/source-map-support": {
       "version": "0.8.1",
-      "resolved": "https://registry.npmmirror.com/@cspotcode/source-map-support/-/source-map-support-0.8.1.tgz",
+      "resolved": "https://registry.npmjs.org/@cspotcode/source-map-support/-/source-map-support-0.8.1.tgz",
       "integrity": "sha512-IchNf6dN4tHoMFIn/7OE8LWZ19Y6q/67Bmf6vnGREv8RSbBVb9LPJxEcnwrcwX6ixSvaiGoomAUvu4YSxXrVgw==",
       "license": "MIT",
       "dependencies": {
@@ -73,7 +72,7 @@
     },
     "node_modules/@hono/node-server": {
       "version": "1.19.9",
-      "resolved": "https://registry.npmmirror.com/@hono/node-server/-/node-server-1.19.9.tgz",
+      "resolved": "https://registry.npmjs.org/@hono/node-server/-/node-server-1.19.9.tgz",
       "integrity": "sha512-vHL6w3ecZsky+8P5MD+eFfaGTyCeOHUIFYMGpQGbrBTSmNNoxv0if69rEZ5giu36weC5saFuznL411gRX7bJDw==",
       "license": "MIT",
       "engines": {
@@ -85,7 +84,7 @@
     },
     "node_modules/@isaacs/balanced-match": {
       "version": "4.0.1",
-      "resolved": "https://registry.npmmirror.com/@isaacs/balanced-match/-/balanced-match-4.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/@isaacs/balanced-match/-/balanced-match-4.0.1.tgz",
       "integrity": "sha512-yzMTt9lEb8Gv7zRioUilSglI0c0smZ9k5D65677DLWLtWJaXIS3CqcGyUFByYKlnUj6TkjLVs54fBl6+TiGQDQ==",
       "license": "MIT",
       "engines": {
@@ -94,7 +93,7 @@
     },
     "node_modules/@isaacs/brace-expansion": {
       "version": "5.0.0",
-      "resolved": "https://registry.npmmirror.com/@isaacs/brace-expansion/-/brace-expansion-5.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/@isaacs/brace-expansion/-/brace-expansion-5.0.0.tgz",
       "integrity": "sha512-ZT55BDLV0yv0RBm2czMiZ+SqCGO7AvmOM3G/w2xhVPH+te0aKgFjmBvGlL1dH+ql2tgGO3MVrbb3jCKyvpgnxA==",
       "license": "MIT",
       "dependencies": {
@@ -106,7 +105,7 @@
     },
     "node_modules/@isaacs/fs-minipass": {
       "version": "4.0.1",
-      "resolved": "https://registry.npmmirror.com/@isaacs/fs-minipass/-/fs-minipass-4.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/@isaacs/fs-minipass/-/fs-minipass-4.0.1.tgz",
       "integrity": "sha512-wgm9Ehl2jpeqP3zw/7mo3kRHFp5MEDhqAdwy1fTGkHAwnkGOVsgpvQhL8B5n1qlb01jV3n/bI0ZfZp5lWA1k4w==",
       "license": "ISC",
       "dependencies": {
@@ -118,7 +117,7 @@
     },
     "node_modules/@jridgewell/resolve-uri": {
       "version": "3.1.2",
-      "resolved": "https://registry.npmmirror.com/@jridgewell/resolve-uri/-/resolve-uri-3.1.2.tgz",
+      "resolved": "https://registry.npmjs.org/@jridgewell/resolve-uri/-/resolve-uri-3.1.2.tgz",
       "integrity": "sha512-bRISgCIjP20/tbWSPWMEi54QVPRZExkuD9lJL+UIxUKtwVJA8wW1Trb1jMs1RFXo1CBTNZ/5hpC9QvmKWdopKw==",
       "license": "MIT",
       "engines": {
@@ -127,13 +126,13 @@
     },
     "node_modules/@jridgewell/sourcemap-codec": {
       "version": "1.5.5",
-      "resolved": "https://registry.npmmirror.com/@jridgewell/sourcemap-codec/-/sourcemap-codec-1.5.5.tgz",
+      "resolved": "https://registry.npmjs.org/@jridgewell/sourcemap-codec/-/sourcemap-codec-1.5.5.tgz",
       "integrity": "sha512-cYQ9310grqxueWbl+WuIUIaiUaDcj7WOq5fVhEljNVgRfOUhY9fy2zTvfoqWsnebh8Sl70VScFbICvJnLKB0Og==",
       "license": "MIT"
     },
     "node_modules/@jridgewell/trace-mapping": {
       "version": "0.3.9",
-      "resolved": "https://registry.npmmirror.com/@jridgewell/trace-mapping/-/trace-mapping-0.3.9.tgz",
+      "resolved": "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.9.tgz",
       "integrity": "sha512-3Belt6tdc8bPgAtbcmdtNJlirVoTmEb5e2gC94PnkwEW9jI6CAHUeoG85tjWP5WquqfavoMtMwiG4P926ZKKuQ==",
       "license": "MIT",
       "dependencies": {
@@ -143,7 +142,7 @@
     },
     "node_modules/@kwsites/file-exists": {
       "version": "1.1.1",
-      "resolved": "https://registry.npmmirror.com/@kwsites/file-exists/-/file-exists-1.1.1.tgz",
+      "resolved": "https://registry.npmjs.org/@kwsites/file-exists/-/file-exists-1.1.1.tgz",
       "integrity": "sha512-m9/5YGR18lIwxSFDwfE3oA7bWuq9kdau6ugN4H2rJeyhFQZcG9AgSHkQtSD15a8WvTgfz9aikZMrKPHvbpqFiw==",
       "license": "MIT",
       "dependencies": {
@@ -152,13 +151,13 @@
     },
     "node_modules/@kwsites/promise-deferred": {
       "version": "1.1.1",
-      "resolved": "https://registry.npmmirror.com/@kwsites/promise-deferred/-/promise-deferred-1.1.1.tgz",
+      "resolved": "https://registry.npmjs.org/@kwsites/promise-deferred/-/promise-deferred-1.1.1.tgz",
       "integrity": "sha512-GaHYm+c0O9MjZRu0ongGBRbinu8gVAMd2UZjji6jVmqKtZluZnptXGWhz1E8j8D2HJ3f/yMxKAUC0b+57wncIw==",
       "license": "MIT"
     },
     "node_modules/@lancedb/lancedb": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb/-/lancedb-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb/-/lancedb-0.22.3.tgz",
       "integrity": "sha512-nRC0fkg+d7dzCtudKHT+VH7znk6KUXRZyuS6HJYNnIrbvXBxaT6wAPjEbf70KTuqvP2znj48Zg+kiwRqkRnAJw==",
       "cpu": [
         "x64",
@@ -192,7 +191,7 @@
     },
     "node_modules/@lancedb/lancedb-darwin-arm64": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-darwin-arm64/-/lancedb-darwin-arm64-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-darwin-arm64/-/lancedb-darwin-arm64-0.22.3.tgz",
       "integrity": "sha512-oP2Kic51nLqs27Xo+AzSVlcMgmmfZbU/PseQ3KBtU92rczO5DYU2St1Y7qDUWcjw+RF3H2v/DKzYed16h1wCBQ==",
       "cpu": [
         "arm64"
@@ -208,7 +207,7 @@
     },
     "node_modules/@lancedb/lancedb-darwin-x64": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-darwin-x64/-/lancedb-darwin-x64-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-darwin-x64/-/lancedb-darwin-x64-0.22.3.tgz",
       "integrity": "sha512-wOwgZkvBgQM8asjolz4NeyPa8W/AjZv4fwyQxJhTqKTGlB3ntrpdn1m84K5qncTmFFDcDfGgZ4DkNVkVK+ydoQ==",
       "cpu": [
         "x64"
@@ -224,7 +223,7 @@
     },
     "node_modules/@lancedb/lancedb-linux-arm64-gnu": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-linux-arm64-gnu/-/lancedb-linux-arm64-gnu-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-linux-arm64-gnu/-/lancedb-linux-arm64-gnu-0.22.3.tgz",
       "integrity": "sha512-YUbFuBKQniTZOR9h2/es1f7lDzdHNt8qXs5GaqFmLQv2GNWpnvKXVA/vVffhCNpFB5nV132o1VhXW3KoMubPsw==",
       "cpu": [
         "arm64"
@@ -240,7 +239,7 @@
     },
     "node_modules/@lancedb/lancedb-linux-arm64-musl": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-linux-arm64-musl/-/lancedb-linux-arm64-musl-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-linux-arm64-musl/-/lancedb-linux-arm64-musl-0.22.3.tgz",
       "integrity": "sha512-jVRMtXxxYaDlZSaclCIHB2N+NJvQ1Fj9EaPeBx+HxG2VqUg0vXKef+yiaD2aGo9sAH6mMmkKJsrPhwABpUC4rQ==",
       "cpu": [
         "arm64"
@@ -256,7 +255,7 @@
     },
     "node_modules/@lancedb/lancedb-linux-x64-gnu": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-linux-x64-gnu/-/lancedb-linux-x64-gnu-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-linux-x64-gnu/-/lancedb-linux-x64-gnu-0.22.3.tgz",
       "integrity": "sha512-co7idTwvNAtbFoFHojhHlTpKsydOm5sZfbtAsQRdoa7g6a61yIrqrMm8D7Ngh756JfzZLFQBMkDUZEW3X4vP/g==",
       "cpu": [
         "x64"
@@ -272,7 +271,7 @@
     },
     "node_modules/@lancedb/lancedb-linux-x64-musl": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-linux-x64-musl/-/lancedb-linux-x64-musl-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-linux-x64-musl/-/lancedb-linux-x64-musl-0.22.3.tgz",
       "integrity": "sha512-+ipFsn5PCODK7mOMq1gZ5OAZWks5YlgmjAlnYMmU8XxvaK0b6lZdA3s1hTmBaBO9+wv+31ulO55oBN4/U8Yldg==",
       "cpu": [
         "x64"
@@ -288,7 +287,7 @@
     },
     "node_modules/@lancedb/lancedb-win32-arm64-msvc": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-win32-arm64-msvc/-/lancedb-win32-arm64-msvc-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-win32-arm64-msvc/-/lancedb-win32-arm64-msvc-0.22.3.tgz",
       "integrity": "sha512-E0XywJYnelIe4pzOlvog+aMHKt5ChW27tgmT2V80Z6PXcX6eN9I69Fj0Q6DK6z1YCTPIPu6Na1Hd6d4GqUNKPw==",
       "cpu": [
         "arm64"
@@ -304,7 +303,7 @@
     },
     "node_modules/@lancedb/lancedb-win32-x64-msvc": {
       "version": "0.22.3",
-      "resolved": "https://registry.npmmirror.com/@lancedb/lancedb-win32-x64-msvc/-/lancedb-win32-x64-msvc-0.22.3.tgz",
+      "resolved": "https://registry.npmjs.org/@lancedb/lancedb-win32-x64-msvc/-/lancedb-win32-x64-msvc-0.22.3.tgz",
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       "cpu": [
         "x64"
@@ -320,10 +319,9 @@
     },
     "node_modules/@mapbox/node-pre-gyp": {
       "version": "1.0.11",
-      "resolved": "https://registry.npmmirror.com/@mapbox/node-pre-gyp/-/node-pre-gyp-1.0.11.tgz",
+      "resolved": "https://registry.npmjs.org/@mapbox/node-pre-gyp/-/node-pre-gyp-1.0.11.tgz",
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       "license": "BSD-3-Clause",
-      "optional": true,
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@@ -341,30 +339,27 @@
     },
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       "version": "2.0.0",
-      "resolved": "https://registry.npmmirror.com/chownr/-/chownr-2.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/chownr/-/chownr-2.0.0.tgz",
       "integrity": "sha512-bIomtDF5KGpdogkLd9VspvFzk9KfpyyGlS8YFVZl7TGPBHL5snIOnxeshwVgPteQ9b4Eydl+pVbIyE1DcvCWgQ==",
       "license": "ISC",
-      "optional": true,
       "engines": {
         "node": ">=10"
       }
     },
     "node_modules/@mapbox/node-pre-gyp/node_modules/minipass": {
       "version": "5.0.0",
-      "resolved": "https://registry.npmmirror.com/minipass/-/minipass-5.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/minipass/-/minipass-5.0.0.tgz",
       "integrity": "sha512-3FnjYuehv9k6ovOEbyOswadCDPX1piCfhV8ncmYtHOjuPwylVWsghTLo7rabjC3Rx5xD4HDx8Wm1xnMF7S5qFQ==",
       "license": "ISC",
-      "optional": true,
       "engines": {
         "node": ">=8"
       }
     },
     "node_modules/@mapbox/node-pre-gyp/node_modules/minizlib": {
       "version": "2.1.2",
-      "resolved": "https://registry.npmmirror.com/minizlib/-/minizlib-2.1.2.tgz",
+      "resolved": "https://registry.npmjs.org/minizlib/-/minizlib-2.1.2.tgz",
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-      "optional": true,
       "dependencies": {
         "minipass": "^3.0.0",
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@@ -375,10 +370,9 @@
     },
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       "version": "3.3.6",
-      "resolved": "https://registry.npmmirror.com/minipass/-/minipass-3.3.6.tgz",
+      "resolved": "https://registry.npmjs.org/minipass/-/minipass-3.3.6.tgz",
       "integrity": "sha512-DxiNidxSEK+tHG6zOIklvNOwm3hvCrbUrdtzY74U6HKTJxvIDfOUL5W5P2Ghd3DTkhhKPYGqeNUIh5qcM4YBfw==",
       "license": "ISC",
-      "optional": true,
       "dependencies": {
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       },
@@ -388,10 +382,10 @@
     },
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       "version": "6.2.1",
-      "resolved": "https://registry.npmmirror.com/tar/-/tar-6.2.1.tgz",
+      "resolved": "https://registry.npmjs.org/tar/-/tar-6.2.1.tgz",
       "integrity": "sha512-DZ4yORTwrbTj/7MZYq2w+/ZFdI6OZ/f9SFHR+71gIVUZhOQPHzVCLpvRnPgyaMpfWxxk/4ONva3GQSyNIKRv6A==",
+      "deprecated": "Old versions of tar are not supported, and contain widely publicized security vulnerabilities, which have been fixed in the current version. Please update. Support for old versions may be purchased (at exhorbitant rates) by contacting i@izs.me",
       "license": "ISC",
-      "optional": true,
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@@ -406,18 +400,17 @@
     },
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       "version": "4.0.0",
-      "resolved": "https://registry.npmmirror.com/yallist/-/yallist-4.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz",
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-      "license": "ISC",
-      "optional": true
+      "license": "ISC"
     },
     "node_modules/@modelcontextprotocol/sdk": {
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-      "resolved": "https://registry.npmmirror.com/@modelcontextprotocol/sdk/-/sdk-1.25.2.tgz",
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+      "version": "1.25.3",
+      "resolved": "https://registry.npmjs.org/@modelcontextprotocol/sdk/-/sdk-1.25.3.tgz",
+      "integrity": "sha512-vsAMBMERybvYgKbg/l4L1rhS7VXV1c0CtyJg72vwxONVX0l4ZfKVAnZEWTQixJGTzKnELjQ59e4NbdFDALRiAQ==",
       "license": "MIT",
       "dependencies": {
-        "@hono/node-server": "^1.19.7",
+        "@hono/node-server": "^1.19.9",
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         "ajv-formats": "^3.0.1",
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@@ -452,7 +445,7 @@
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-      "resolved": "https://registry.npmmirror.com/@swc/helpers/-/helpers-0.5.18.tgz",
+      "resolved": "https://registry.npmjs.org/@swc/helpers/-/helpers-0.5.18.tgz",
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@@ -461,43 +454,43 @@
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-      "resolved": "https://registry.npmmirror.com/@tsconfig/node10/-/node10-1.0.12.tgz",
+      "resolved": "https://registry.npmjs.org/@tsconfig/node10/-/node10-1.0.12.tgz",
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-      "resolved": "https://registry.npmmirror.com/@tsconfig/node12/-/node12-1.0.11.tgz",
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       "license": "MIT"
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-      "resolved": "https://registry.npmmirror.com/@tsconfig/node14/-/node14-1.0.3.tgz",
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+      "integrity": "sha512-fov56fJiRuThVFXD6o6/Q354S7pnWMJIVlDBYijsTNx6jKSE4pvrDTs6lUnmGvNyfJwFQQwWy3owKz1ucIhveQ==",
       "license": "BlueOak-1.0.0",
       "dependencies": {
         "@isaacs/fs-minipass": "^4.0.0",
@@ -2483,7 +2614,7 @@
     },
     "node_modules/toidentifier": {
       "version": "1.0.1",
-      "resolved": "https://registry.npmmirror.com/toidentifier/-/toidentifier-1.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/toidentifier/-/toidentifier-1.0.1.tgz",
       "integrity": "sha512-o5sSPKEkg/DIQNmH43V0/uerLrpzVedkUh8tGNvaeXpfpuwjKenlSox/2O/BTlZUtEe+JG7s5YhEz608PlAHRA==",
       "license": "MIT",
       "engines": {
@@ -2492,14 +2623,13 @@
     },
     "node_modules/tr46": {
       "version": "0.0.3",
-      "resolved": "https://registry.npmmirror.com/tr46/-/tr46-0.0.3.tgz",
+      "resolved": "https://registry.npmjs.org/tr46/-/tr46-0.0.3.tgz",
       "integrity": "sha512-N3WMsuqV66lT30CrXNbEjx4GEwlow3v6rr4mCcv6prnfwhS01rkgyFdjPNBYd9br7LpXV1+Emh01fHnq2Gdgrw==",
-      "license": "MIT",
-      "optional": true
+      "license": "MIT"
     },
     "node_modules/tree-sitter": {
       "version": "0.21.1",
-      "resolved": "https://registry.npmmirror.com/tree-sitter/-/tree-sitter-0.21.1.tgz",
+      "resolved": "https://registry.npmjs.org/tree-sitter/-/tree-sitter-0.21.1.tgz",
       "integrity": "sha512-7dxoA6kYvtgWw80265MyqJlkRl4yawIjO7S5MigytjELkX43fV2WsAXzsNfO7sBpPPCF5Gp0+XzHk0DwLCq3xQ==",
       "hasInstallScript": true,
       "license": "MIT",
@@ -2510,7 +2640,7 @@
     },
     "node_modules/tree-sitter-c": {
       "version": "0.21.4",
-      "resolved": "https://registry.npmmirror.com/tree-sitter-c/-/tree-sitter-c-0.21.4.tgz",
+      "resolved": "https://registry.npmjs.org/tree-sitter-c/-/tree-sitter-c-0.21.4.tgz",
       "integrity": "sha512-IahxFIhXiY15SUlrt2upBiKSBGdOaE1fjKLK1Ik5zxqGHf6T1rvr3IJrovbsE5sXhypx7Hnmf50gshsppaIihA==",
       "hasInstallScript": true,
       "license": "MIT",
@@ -2529,7 +2659,7 @@
     },
     "node_modules/tree-sitter-go": {
       "version": "0.21.2",
-      "resolved": "https://registry.npmmirror.com/tree-sitter-go/-/tree-sitter-go-0.21.2.tgz",
+      "resolved": "https://registry.npmjs.org/tree-sitter-go/-/tree-sitter-go-0.21.2.tgz",
       "integrity": "sha512-aMFwjsB948nWhURiIxExK8QX29JYKs96P/IfXVvluVMRJZpL04SREHsdOZHYqJr1whkb7zr3/gWHqqvlkczmvw==",
       "hasInstallScript": true,
       "license": "MIT",
@@ -2548,7 +2678,7 @@
     },
     "node_modules/tree-sitter-java": {
       "version": "0.21.0",
-      "resolved": "https://registry.npmmirror.com/tree-sitter-java/-/tree-sitter-java-0.21.0.tgz",
+      "resolved": "https://registry.npmjs.org/tree-sitter-java/-/tree-sitter-java-0.21.0.tgz",
       "integrity": "sha512-CKJiTo1uc3SUsgEcaZgufGx8my6dzihy8JR/JsJH40Tj3uSe2/eFLk+0q+fpbosGAyY4YiXJtEoFB2O4bS2yOw==",
       "hasInstallScript": true,
       "license": "MIT",
@@ -2567,7 +2697,7 @@
     },
     "node_modules/tree-sitter-python": {
       "version": "0.21.0",
-      "resolved": "https://registry.npmmirror.com/tree-sitter-python/-/tree-sitter-python-0.21.0.tgz",
+      "resolved": "https://registry.npmjs.org/tree-sitter-python/-/tree-sitter-python-0.21.0.tgz",
       "integrity": "sha512-IUKx7JcTVbByUx1iHGFS/QsIjx7pqwTMHL9bl/NGyhyyydbfNrpruo2C7W6V4KZrbkkCOlX8QVrCoGOFW5qecg==",
       "hasInstallScript": true,
       "license": "MIT",
@@ -2586,13 +2716,13 @@
     },
     "node_modules/tree-sitter-python/node_modules/node-addon-api": {
       "version": "7.1.1",
-      "resolved": "https://registry.npmmirror.com/node-addon-api/-/node-addon-api-7.1.1.tgz",
+      "resolved": "https://registry.npmjs.org/node-addon-api/-/node-addon-api-7.1.1.tgz",
       "integrity": "sha512-5m3bsyrjFWE1xf7nz7YXdN4udnVtXK6/Yfgn5qnahL6bCkf2yKt4k3nuTKAtT4r3IG8JNR2ncsIMdZuAzJjHQQ==",
       "license": "MIT"
     },
     "node_modules/tree-sitter-rust": {
       "version": "0.21.0",
-      "resolved": "https://registry.npmmirror.com/tree-sitter-rust/-/tree-sitter-rust-0.21.0.tgz",
+      "resolved": "https://registry.npmjs.org/tree-sitter-rust/-/tree-sitter-rust-0.21.0.tgz",
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       "hasInstallScript": true,
       "license": "MIT",
@@ -2611,14 +2741,14 @@
     },
     "node_modules/tree-sitter-rust/node_modules/node-addon-api": {
       "version": "7.1.1",
-      "resolved": "https://registry.npmmirror.com/node-addon-api/-/node-addon-api-7.1.1.tgz",
+      "resolved": "https://registry.npmjs.org/node-addon-api/-/node-addon-api-7.1.1.tgz",
       "integrity": "sha512-5m3bsyrjFWE1xf7nz7YXdN4udnVtXK6/Yfgn5qnahL6bCkf2yKt4k3nuTKAtT4r3IG8JNR2ncsIMdZuAzJjHQQ==",
       "license": "MIT"
     },
     "node_modules/tree-sitter-typescript": {
-      "version": "0.21.1",
-      "resolved": "https://registry.npmmirror.com/tree-sitter-typescript/-/tree-sitter-typescript-0.21.1.tgz",
-      "integrity": "sha512-emQMXz1CpVSkMUq1NEMrbJkUUdKyGrnIl++Mt4LjEeq7ttpOdotb4a2A6zSMs39ppVebFhpTlbSrAMDSEWEEjw==",
+      "version": "0.21.2",
+      "resolved": "https://registry.npmjs.org/tree-sitter-typescript/-/tree-sitter-typescript-0.21.2.tgz",
+      "integrity": "sha512-/RyNK41ZpkA8PuPZimR6pGLvNR1p0ibRUJwwQn4qAjyyLEIQD/BNlwS3NSxWtGsAWZe9gZ44VK1mWx2+eQVldg==",
       "hasInstallScript": true,
       "license": "MIT",
       "dependencies": {
@@ -2636,7 +2766,7 @@
     },
     "node_modules/ts-node": {
       "version": "10.9.2",
-      "resolved": "https://registry.npmmirror.com/ts-node/-/ts-node-10.9.2.tgz",
+      "resolved": "https://registry.npmjs.org/ts-node/-/ts-node-10.9.2.tgz",
       "integrity": "sha512-f0FFpIdcHgn8zcPSbf1dRevwt047YMnaiJM3u2w2RewrB+fob/zePZcrOyQoLMMO7aBIddLcQIEK5dYjkLnGrQ==",
       "license": "MIT",
       "dependencies": {
@@ -2679,13 +2809,25 @@
     },
     "node_modules/tslib": {
       "version": "2.8.1",
-      "resolved": "https://registry.npmmirror.com/tslib/-/tslib-2.8.1.tgz",
+      "resolved": "https://registry.npmjs.org/tslib/-/tslib-2.8.1.tgz",
       "integrity": "sha512-oJFu94HQb+KVduSUQL7wnpmqnfmLsOA/nAh6b6EH0wCEoK0/mPeXU6c3wKDV83MkOuHPRHtSXKKU99IBazS/2w==",
       "license": "0BSD"
     },
+    "node_modules/type-fest": {
+      "version": "0.13.1",
+      "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.13.1.tgz",
+      "integrity": "sha512-34R7HTnG0XIJcBSn5XhDd7nNFPRcXYRZrBB2O2jdKqYODldSzBAqzsWoZYYvduky73toYS/ESqxPvkDf/F0XMg==",
+      "license": "(MIT OR CC0-1.0)",
+      "engines": {
+        "node": ">=10"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    },
     "node_modules/type-is": {
       "version": "2.0.1",
-      "resolved": "https://registry.npmmirror.com/type-is/-/type-is-2.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/type-is/-/type-is-2.0.1.tgz",
       "integrity": "sha512-OZs6gsjF4vMp32qrCbiVSkrFmXtG/AZhY3t0iAMrMBiAZyV9oALtXO8hsrHbMXF9x6L3grlFuwW2oAz7cav+Gw==",
       "license": "MIT",
       "dependencies": {
@@ -2699,7 +2841,7 @@
     },
     "node_modules/typescript": {
       "version": "5.9.3",
-      "resolved": "https://registry.npmmirror.com/typescript/-/typescript-5.9.3.tgz",
+      "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.9.3.tgz",
       "integrity": "sha512-jl1vZzPDinLr9eUt3J/t7V6FgNEw9QjvBPdysz9KfQDD41fQrC2Y4vKQdiaUpFT4bXlb1RHhLpp8wtm6M5TgSw==",
       "license": "Apache-2.0",
       "bin": {
@@ -2712,7 +2854,7 @@
     },
     "node_modules/typical": {
       "version": "4.0.0",
-      "resolved": "https://registry.npmmirror.com/typical/-/typical-4.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/typical/-/typical-4.0.0.tgz",
       "integrity": "sha512-VAH4IvQ7BDFYglMd7BPRDfLgxZZX4O4TFcRDA6EN5X7erNJJq+McIEp8np9aVtxrCJ6qx4GTYVfOWNjcqwZgRw==",
       "license": "MIT",
       "engines": {
@@ -2721,13 +2863,13 @@
     },
     "node_modules/undici-types": {
       "version": "7.16.0",
-      "resolved": "https://registry.npmmirror.com/undici-types/-/undici-types-7.16.0.tgz",
+      "resolved": "https://registry.npmjs.org/undici-types/-/undici-types-7.16.0.tgz",
       "integrity": "sha512-Zz+aZWSj8LE6zoxD+xrjh4VfkIG8Ya6LvYkZqtUQGJPZjYl53ypCaUwWqo7eI0x66KBGeRo+mlBEkMSeSZ38Nw==",
       "license": "MIT"
     },
     "node_modules/universalify": {
       "version": "2.0.1",
-      "resolved": "https://registry.npmmirror.com/universalify/-/universalify-2.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/universalify/-/universalify-2.0.1.tgz",
       "integrity": "sha512-gptHNQghINnc/vTGIk0SOFGFNXw7JVrlRUtConJRlvaw6DuX0wO5Jeko9sWrMBhh+PsYAZ7oXAiOnf/UKogyiw==",
       "license": "MIT",
       "engines": {
@@ -2736,7 +2878,7 @@
     },
     "node_modules/unpipe": {
       "version": "1.0.0",
-      "resolved": "https://registry.npmmirror.com/unpipe/-/unpipe-1.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz",
       "integrity": "sha512-pjy2bYhSsufwWlKwPc+l3cN7+wuJlK6uz0YdJEOlQDbl6jo/YlPi4mb8agUkVC8BF7V8NuzeyPNqRksA3hztKQ==",
       "license": "MIT",
       "engines": {
@@ -2745,20 +2887,19 @@
     },
     "node_modules/util-deprecate": {
       "version": "1.0.2",
-      "resolved": "https://registry.npmmirror.com/util-deprecate/-/util-deprecate-1.0.2.tgz",
+      "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
       "integrity": "sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==",
-      "license": "MIT",
-      "optional": true
+      "license": "MIT"
     },
     "node_modules/v8-compile-cache-lib": {
       "version": "3.0.1",
-      "resolved": "https://registry.npmmirror.com/v8-compile-cache-lib/-/v8-compile-cache-lib-3.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/v8-compile-cache-lib/-/v8-compile-cache-lib-3.0.1.tgz",
       "integrity": "sha512-wa7YjyUGfNZngI/vtK0UHAN+lgDCxBPCylVXGp0zu59Fz5aiGtNXaq3DhIov063MorB+VfufLh3JlF2KdTK3xg==",
       "license": "MIT"
     },
     "node_modules/vary": {
       "version": "1.1.2",
-      "resolved": "https://registry.npmmirror.com/vary/-/vary-1.1.2.tgz",
+      "resolved": "https://registry.npmjs.org/vary/-/vary-1.1.2.tgz",
       "integrity": "sha512-BNGbWLfd0eUPabhkXUVm0j8uuvREyTh5ovRa/dyow/BqAbZJyC+5fU+IzQOzmAKzYqYRAISoRhdQr3eIZ/PXqg==",
       "license": "MIT",
       "engines": {
@@ -2767,17 +2908,15 @@
     },
     "node_modules/webidl-conversions": {
       "version": "3.0.1",
-      "resolved": "https://registry.npmmirror.com/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
+      "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-3.0.1.tgz",
       "integrity": "sha512-2JAn3z8AR6rjK8Sm8orRC0h/bcl/DqL7tRPdGZ4I1CjdF+EaMLmYxBHyXuKL849eucPFhvBoxMsflfOb8kxaeQ==",
-      "license": "BSD-2-Clause",
-      "optional": true
+      "license": "BSD-2-Clause"
     },
     "node_modules/whatwg-url": {
       "version": "5.0.0",
-      "resolved": "https://registry.npmmirror.com/whatwg-url/-/whatwg-url-5.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/whatwg-url/-/whatwg-url-5.0.0.tgz",
       "integrity": "sha512-saE57nupxk6v3HY35+jzBwYa0rKSy0XR8JSxZPwgLr7ys0IBzhGviA1/TUGJLmSVqs8pb9AnvICXEuOHLprYTw==",
       "license": "MIT",
-      "optional": true,
       "dependencies": {
         "tr46": "~0.0.3",
         "webidl-conversions": "^3.0.0"
@@ -2785,7 +2924,7 @@
     },
     "node_modules/which": {
       "version": "2.0.2",
-      "resolved": "https://registry.npmmirror.com/which/-/which-2.0.2.tgz",
+      "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
       "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
       "license": "ISC",
       "dependencies": {
@@ -2800,17 +2939,16 @@
     },
     "node_modules/wide-align": {
       "version": "1.1.5",
-      "resolved": "https://registry.npmmirror.com/wide-align/-/wide-align-1.1.5.tgz",
+      "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.5.tgz",
       "integrity": "sha512-eDMORYaPNZ4sQIuuYPDHdQvf4gyCF9rEEV/yPxGfwPkRodwEgiMUUXTx/dex+Me0wxx53S+NgUHaP7y3MGlDmg==",
       "license": "ISC",
-      "optional": true,
       "dependencies": {
         "string-width": "^1.0.2 || 2 || 3 || 4"
       }
     },
     "node_modules/wordwrapjs": {
       "version": "5.1.1",
-      "resolved": "https://registry.npmmirror.com/wordwrapjs/-/wordwrapjs-5.1.1.tgz",
+      "resolved": "https://registry.npmjs.org/wordwrapjs/-/wordwrapjs-5.1.1.tgz",
       "integrity": "sha512-0yweIbkINJodk27gX9LBGMzyQdBDan3s/dEAiwBOj+Mf0PPyWL6/rikalkv8EeD0E8jm4o5RXEOrFTP3NXbhJg==",
       "license": "MIT",
       "engines": {
@@ -2819,13 +2957,13 @@
     },
     "node_modules/wrappy": {
       "version": "1.0.2",
-      "resolved": "https://registry.npmmirror.com/wrappy/-/wrappy-1.0.2.tgz",
+      "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
       "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==",
       "license": "ISC"
     },
     "node_modules/yallist": {
       "version": "5.0.0",
-      "resolved": "https://registry.npmmirror.com/yallist/-/yallist-5.0.0.tgz",
+      "resolved": "https://registry.npmjs.org/yallist/-/yallist-5.0.0.tgz",
       "integrity": "sha512-YgvUTfwqyc7UXVMrB+SImsVYSmTS8X/tSrtdNZMImM+n7+QTriRXyXim0mBrTXNeqzVF0KWGgHPeiyViFFrNDw==",
       "license": "BlueOak-1.0.0",
       "engines": {
@@ -2834,7 +2972,7 @@
     },
     "node_modules/yn": {
       "version": "3.1.1",
-      "resolved": "https://registry.npmmirror.com/yn/-/yn-3.1.1.tgz",
+      "resolved": "https://registry.npmjs.org/yn/-/yn-3.1.1.tgz",
       "integrity": "sha512-Ux4ygGWsu2c7isFWe8Yu1YluJmqVhxqK2cLXNQA5AcC3QfbGNpM7fu0Y8b/z16pXLnFxZYvWhd3fhBY9DLmC6Q==",
       "license": "MIT",
       "engines": {
@@ -2842,9 +2980,9 @@
       }
     },
     "node_modules/zod": {
-      "version": "4.3.5",
-      "resolved": "https://registry.npmmirror.com/zod/-/zod-4.3.5.tgz",
-      "integrity": "sha512-k7Nwx6vuWx1IJ9Bjuf4Zt1PEllcwe7cls3VNzm4CQ1/hgtFUK2bRNG3rvnpPUhFjmqJKAKtjV576KnUkHocg/g==",
+      "version": "4.3.6",
+      "resolved": "https://registry.npmjs.org/zod/-/zod-4.3.6.tgz",
+      "integrity": "sha512-rftlrkhHZOcjDwkGlnUtZZkvaPHCsDATp4pGpuOOMDaTdDDXF91wuVDJoWoPsKX/3YPQ5fHuF3STjcYyKr+Qhg==",
       "license": "MIT",
       "funding": {
         "url": "https://github.com/sponsors/colinhacks"
@@ -2852,7 +2990,7 @@
     },
     "node_modules/zod-to-json-schema": {
       "version": "3.25.1",
-      "resolved": "https://registry.npmmirror.com/zod-to-json-schema/-/zod-to-json-schema-3.25.1.tgz",
+      "resolved": "https://registry.npmjs.org/zod-to-json-schema/-/zod-to-json-schema-3.25.1.tgz",
       "integrity": "sha512-pM/SU9d3YAggzi6MtR4h7ruuQlqKtad8e9S0fmxcMi+ueAK5Korys/aWcV9LIIHTVbj01NdzxcnXSN+O74ZIVA==",
       "license": "ISC",
       "peerDependencies": {

From a01046bc413185da01d203f95b186c677c574d11 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 3 Feb 2026 06:42:45 +0000
Subject: [PATCH 3/8] Fix critical MCP HTTP connection issues

- Add comprehensive error handling for HTTP requests and server connections
- Fix session management to return session ID in response headers
- Eliminate code duplication by consolidating handler setup into attachServerHandlers
- Add graceful shutdown mechanism with SIGTERM/SIGINT handlers
- Store both transport and server instances in session map
- Add proper error handling for stateless mode
- Fix race condition in session initialization

Co-authored-by: mars167 <29228178+mars167@users.noreply.github.com>
---
 src/mcp/server.ts | 233 +++++++++++++++++++++++++++++-----------------
 1 file changed, 149 insertions(+), 84 deletions(-)

diff --git a/src/mcp/server.ts b/src/mcp/server.ts
index 18c83d6..e64667b 100644
--- a/src/mcp/server.ts
+++ b/src/mcp/server.ts
@@ -110,11 +110,15 @@ export class GitAIV2MCPServer {
       this.registry.register(tool, schema);
     }
 
-    this.server.setRequestHandler(ListToolsRequestSchema, async () => {
+    this.attachServerHandlers(this.server);
+  }
+
+  private attachServerHandlers(serverInstance: Server) {
+    serverInstance.setRequestHandler(ListToolsRequestSchema, async () => {
       return { tools: this.registry.listTools() };
     });
 
-    this.server.setRequestHandler(CallToolRequestSchema, async (request) => {
+    serverInstance.setRequestHandler(CallToolRequestSchema, async (request) => {
       const name = request.params.name;
       const args = request.params.arguments ?? {};
       const callPath = typeof (args as any).path === 'string' ? String((args as any).path) : undefined;
@@ -148,102 +152,163 @@ export class GitAIV2MCPServer {
     const log = createLogger({ component: 'mcp' });
     const port = this.options.port ?? 3000;
     
-    const sessions = new Map<string, StreamableHTTPServerTransport>();
+    const sessions = new Map<string, { transport: StreamableHTTPServerTransport, server: Server }>();
 
     const httpServer = createServer(async (req: IncomingMessage, res: ServerResponse) => {
-      const url = new URL(req.url ?? '/', `http://${req.headers.host ?? 'localhost'}`);
-      
-      if (url.pathname === '/health') {
-        res.writeHead(200, { 'Content-Type': 'application/json' });
-        res.end(JSON.stringify({ status: 'ok', sessions: sessions.size }));
-        return;
-      }
+      try {
+        const url = new URL(req.url ?? '/', `http://${req.headers.host ?? 'localhost'}`);
+        
+        if (url.pathname === '/health') {
+          res.writeHead(200, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ status: 'ok', sessions: sessions.size }));
+          return;
+        }
 
-      if (url.pathname !== '/mcp') {
-        res.writeHead(404, { 'Content-Type': 'application/json' });
-        res.end(JSON.stringify({ error: 'Not found. Use /mcp for MCP endpoint or /health for health check.' }));
-        return;
-      }
+        if (url.pathname !== '/mcp') {
+          res.writeHead(404, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'Not found. Use /mcp for MCP endpoint or /health for health check.' }));
+          return;
+        }
 
-      const sessionId = req.headers['mcp-session-id'] as string | undefined;
-      let transport: StreamableHTTPServerTransport;
+        const sessionId = req.headers['mcp-session-id'] as string | undefined;
+        let transport: StreamableHTTPServerTransport;
+        let responseSessionId: string | undefined;
 
-      if (sessionId && sessions.has(sessionId)) {
-        transport = sessions.get(sessionId)!;
-      } else if (this.options.stateless) {
-        transport = new StreamableHTTPServerTransport({
-          sessionIdGenerator: undefined,
-        });
-        const serverInstance = new Server(
-          { name: 'git-ai-v2', version: '2.0.0' },
-          { capabilities: { tools: {} } }
-        );
-        this.setupServerHandlers(serverInstance);
-        await serverInstance.connect(transport);
-      } else {
-        const newSessionId = randomUUID();
-        transport = new StreamableHTTPServerTransport({
-          sessionIdGenerator: () => newSessionId,
-        });
-        
-        const serverInstance = new Server(
-          { name: 'git-ai-v2', version: '2.0.0' },
-          { capabilities: { tools: {} } }
-        );
-        this.setupServerHandlers(serverInstance);
-        await serverInstance.connect(transport);
-        
-        sessions.set(newSessionId, transport);
-        log.info('session_created', { sessionId: newSessionId, totalSessions: sessions.size });
-        
-        transport.onclose = () => {
-          sessions.delete(newSessionId);
-          log.info('session_closed', { sessionId: newSessionId, totalSessions: sessions.size });
-        };
-      }
+        if (sessionId && sessions.has(sessionId)) {
+          const session = sessions.get(sessionId)!;
+          transport = session.transport;
+          responseSessionId = sessionId;
+        } else if (this.options.stateless) {
+          // Stateless mode: create a new server instance for each request
+          transport = new StreamableHTTPServerTransport({
+            sessionIdGenerator: undefined,
+          });
+          const serverInstance = new Server(
+            { name: 'git-ai-v2', version: '2.0.0' },
+            { capabilities: { tools: {} } }
+          );
+          this.attachServerHandlers(serverInstance);
+          try {
+            await serverInstance.connect(transport);
+          } catch (err) {
+            log.error('stateless_server_connection_failed', { error: String(err) });
+            res.writeHead(500, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Failed to initialize MCP server connection' }));
+            return;
+          }
+          // No session ID in stateless mode
+        } else {
+          // Create a new session
+          const newSessionId = randomUUID();
+          transport = new StreamableHTTPServerTransport({
+            sessionIdGenerator: () => newSessionId,
+          });
+          
+          const serverInstance = new Server(
+            { name: 'git-ai-v2', version: '2.0.0' },
+            { capabilities: { tools: {} } }
+          );
+          this.attachServerHandlers(serverInstance);
+          
+          try {
+            await serverInstance.connect(transport);
+          } catch (err) {
+            log.error('server_connection_failed', { sessionId: newSessionId, error: String(err) });
+            res.writeHead(500, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Failed to initialize MCP server connection' }));
+            return;
+          }
+          
+          // Store session before setting up cleanup handlers
+          sessions.set(newSessionId, { transport, server: serverInstance });
+          responseSessionId = newSessionId;
+          log.info('session_created', { sessionId: newSessionId, totalSessions: sessions.size });
+          
+          transport.onclose = () => {
+            sessions.delete(newSessionId);
+            log.info('session_closed', { sessionId: newSessionId, totalSessions: sessions.size });
+          };
+        }
+
+        // Set session ID in response header for client to reuse
+        if (responseSessionId) {
+          res.setHeader('mcp-session-id', responseSessionId);
+        }
 
-      await transport.handleRequest(req, res);
+        await transport.handleRequest(req, res);
+      } catch (err) {
+        log.error('http_request_handler_error', { error: String(err), stack: err instanceof Error ? err.stack : undefined });
+        if (!res.headersSent) {
+          res.writeHead(500, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'Internal server error' }));
+        }
+      }
     });
 
-    httpServer.listen(port, () => {
-      log.info('server_started', { 
-        startDir: this.startDir, 
-        transport: 'http',
-        port,
-        endpoint: `http://localhost:${port}/mcp`,
-        health: `http://localhost:${port}/health`,
-        stateless: !!this.options.stateless,
+    // Store reference to http server for graceful shutdown
+    const serverStartPromise = new Promise<void>((resolve, reject) => {
+      httpServer.once('error', reject);
+      httpServer.listen(port, () => {
+        log.info('server_started', { 
+          startDir: this.startDir, 
+          transport: 'http',
+          port,
+          endpoint: `http://localhost:${port}/mcp`,
+          health: `http://localhost:${port}/health`,
+          stateless: !!this.options.stateless,
+        });
+        console.error(JSON.stringify({
+          ts: new Date().toISOString(),
+          level: 'info',
+          msg: 'MCP HTTP server started',
+          port,
+          endpoint: `http://localhost:${port}/mcp`,
+          health: `http://localhost:${port}/health`,
+        }));
+        resolve();
       });
-      console.error(JSON.stringify({
-        ts: new Date().toISOString(),
-        level: 'info',
-        msg: 'MCP HTTP server started',
-        port,
-        endpoint: `http://localhost:${port}/mcp`,
-        health: `http://localhost:${port}/health`,
-      }));
     });
-  }
 
-  private setupServerHandlers(serverInstance: Server) {
-    serverInstance.setRequestHandler(ListToolsRequestSchema, async () => {
-      return { tools: this.registry.listTools() };
-    });
+    await serverStartPromise;
 
-    serverInstance.setRequestHandler(CallToolRequestSchema, async (request) => {
-      const name = request.params.name;
-      const args = request.params.arguments ?? {};
-      const callPath = typeof (args as any).path === 'string' ? String((args as any).path) : undefined;
-      const log = createLogger({ component: 'mcp', tool: name });
-      const startedAt = Date.now();
-      const context: ToolContext = { startDir: this.startDir, options: this.options };
+    // Handle graceful shutdown
+    const shutdown = async () => {
+      log.info('server_shutting_down', { sessionsToClose: sessions.size });
+      
+      // Close all active sessions
+      for (const [sessionId, session] of sessions.entries()) {
+        try {
+          if (session.transport.onclose) {
+            session.transport.onclose();
+          }
+        } catch (err) {
+          log.error('session_cleanup_error', { sessionId, error: String(err) });
+        }
+      }
+      sessions.clear();
 
-      const response = await this.registry.execute(name, args, context);
+      // Close HTTP server
+      await new Promise<void>((resolve) => {
+        httpServer.close(() => {
+          log.info('server_stopped');
+          resolve();
+        });
+      });
+    };
 
-      log.info('tool_call', { ok: !response.isError, duration_ms: Date.now() - startedAt, path: callPath });
-      const repoRootForLog = await this.resolveRepoRoot(callPath).catch(() => undefined);
-      await this.writeAccessLog(name, args, Date.now() - startedAt, !response.isError, repoRootForLog);
-      return response;
+    // Register signal handlers for graceful shutdown
+    process.on('SIGTERM', async () => {
+      await shutdown();
+      process.exit(0);
     });
+
+    process.on('SIGINT', async () => {
+      await shutdown();
+      process.exit(0);
+    });
+  }
+
+  private setupServerHandlers(serverInstance: Server) {
+    this.attachServerHandlers(serverInstance);
   }
 }

From 8b4b4411f4ac5bf86d565236a7503f695c346230 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 3 Feb 2026 06:46:29 +0000
Subject: [PATCH 4/8] Update documentation for MCP HTTP improvements

- Create English MCP documentation (docs/mcp.md)
- Update Chinese MCP documentation with HTTP improvements
- Document session management and persistence
- Document error handling and graceful shutdown
- Update README.md and README.zh-CN.md with HTTP features
- Add session usage examples

Co-authored-by: mars167 <29228178+mars167@users.noreply.github.com>
---
 README.md         |   3 +
 README.zh-CN.md   |   3 +
 docs/mcp.md       | 280 ++++++++++++++++++++++++++++++++++++++++++++++
 docs/zh-CN/mcp.md |  27 +++++
 src/mcp/server.ts |   8 +-
 5 files changed, 320 insertions(+), 1 deletion(-)
 create mode 100644 docs/mcp.md

diff --git a/README.md b/README.md
index d6a42a9..a90dfa2 100644
--- a/README.md
+++ b/README.md
@@ -372,6 +372,9 @@ Then configure each agent to connect to `http://localhost:3000/mcp`.
 - Multiple concurrent sessions
 - Health check endpoint: `http://localhost:3000/health`
 - Session management with automatic cleanup
+- Session persistence via `mcp-session-id` response header
+- Comprehensive error handling with proper HTTP status codes
+- Graceful shutdown with SIGTERM/SIGINT signal handlers
 - Optional stateless mode for load-balanced setups: `--stateless`
 
 Then restart Claude Desktop and start conversing:
diff --git a/README.zh-CN.md b/README.zh-CN.md
index 9e7bf01..ca1ed52 100644
--- a/README.zh-CN.md
+++ b/README.zh-CN.md
@@ -369,6 +369,9 @@ git-ai ai serve --http --port 3000
 - 支持多个并发会话
 - 健康检查端点：`http://localhost:3000/health`
 - 自动管理会话生命周期
+- 通过 `mcp-session-id` 响应头实现 Session 持久化
+- 完善的错误处理机制，返回正确的 HTTP 状态码
+- 支持 SIGTERM/SIGINT 信号，实现优雅关闭
 - 可选无状态模式，用于负载均衡场景：`--stateless`
 
 然后重启 Claude Desktop，即可开始对话：
diff --git a/docs/mcp.md b/docs/mcp.md
new file mode 100644
index 0000000..4eb0ed4
--- /dev/null
+++ b/docs/mcp.md
@@ -0,0 +1,280 @@
+# MCP Server Integration
+
+`git-ai` provides an MCP (Model Context Protocol) Server that can be integrated with AI Agents (such as Claude Desktop, Cursor, Trae, etc.), empowering them with "code understanding" capabilities.
+
+## Starting the Server
+
+### Stdio Mode (Default, Single Client)
+
+Run from any directory:
+
+```bash
+git-ai ai serve
+```
+
+This starts the server in stdio mode (waiting for client connection). Configure it in MCP-compatible clients. Suitable for single Agent connection.
+
+### HTTP Mode (Multiple Clients)
+
+If you need multiple Agents to connect simultaneously (e.g., using Claude Code and Cursor together), use HTTP mode:
+
+```bash
+git-ai ai serve --http --port 3000
+```
+
+HTTP mode features:
+- **Multi-client support**: Each connection gets an independent session
+- **Health check endpoint**: `http://localhost:3000/health` returns server status
+- **MCP endpoint**: `http://localhost:3000/mcp` for MCP protocol communication
+- **Session management**: Automatic client session lifecycle management
+- **Session persistence**: Session IDs returned in `mcp-session-id` response header for client reuse
+- **Error handling**: Comprehensive error handling with proper HTTP status codes
+- **Graceful shutdown**: SIGTERM/SIGINT signal handlers for clean shutdown
+
+#### Options
+
+| Option | Description | Default |
+|--------|-------------|---------|
+| `--http` | Enable HTTP transport (supports multiple clients) | No (uses stdio) |
+| `--port <port>` | HTTP server port | 3000 |
+| `--stateless` | Stateless mode (no session tracking, for load-balanced setups) | No |
+| `--disable-mcp-log` | Disable MCP access logging | No |
+
+#### HTTP Mode Examples
+
+```bash
+# Default port 3000
+git-ai ai serve --http
+
+# Custom port
+git-ai ai serve --http --port 8080
+
+# Stateless mode (for load-balanced scenarios)
+git-ai ai serve --http --port 3000 --stateless
+
+# Disable access logging
+git-ai ai serve --http --disable-mcp-log
+```
+
+#### Health Check
+
+```bash
+curl http://localhost:3000/health
+# {"status":"ok","sessions":2}
+```
+
+#### Session Management
+
+When connecting to the MCP endpoint, the server:
+1. Creates a new session if no `mcp-session-id` header is provided
+2. Returns the session ID in the `mcp-session-id` response header
+3. Clients should include this header in subsequent requests to reuse the session
+4. Sessions are automatically cleaned up when the connection closes
+
+Example session workflow:
+```bash
+# First request - new session created
+curl -X POST http://localhost:3000/mcp \
+  -H "Content-Type: application/json" \
+  -H "Accept: application/json, text/event-stream" \
+  -i  # -i shows headers including mcp-session-id
+
+# Subsequent requests - reuse session
+curl -X POST http://localhost:3000/mcp \
+  -H "Content-Type: application/json" \
+  -H "Accept: application/json, text/event-stream" \
+  -H "mcp-session-id: <session-id-from-first-response>" \
+  ...
+```
+
+## Tool List
+
+### Repository Management
+- `get_repo({ path })`: Returns repository root and scan root for specified `path` (debugging)
+
+### Index Management
+- `check_index({ path })`: Check if index structure matches current version (rebuild if inconsistent)
+- `rebuild_index({ path, dim?, overwrite? })`: Rebuild full index (writes to `.git-ai/`; Risk: high)
+- `pack_index({ path, lfs? })`: Pack index to `.git-ai/lancedb.tar.gz` (optional git-lfs track)
+- `unpack_index({ path })`: Unpack index archive
+
+### Retrieval
+- `search_symbols({ path, query, mode?, case_insensitive?, max_candidates?, limit?, lang?, with_repo_map?, repo_map_max_files?, repo_map_max_symbols?, wiki_dir? })`: Symbol retrieval (lang: auto/all/java/ts/python/go/rust/c/markdown/yaml; optional repo_map)
+- `semantic_search({ path, query, topk?, lang?, with_repo_map?, repo_map_max_files?, repo_map_max_symbols?, wiki_dir? })`: Semantic search based on LanceDB + SQ8 (lang: auto/all/java/ts/python/go/rust/c/markdown/yaml; optional repo_map)
+- `repo_map({ path, max_files?, max_symbols?, wiki_dir? })`: Generate repo map (important files/symbols ranking, Wiki navigation)
+- `ast_graph_find({ path, prefix, limit?, lang? })`: Find symbol definitions by name prefix (case-insensitive; lang: auto/all/java/ts)
+- `ast_graph_children({ path, id, as_file? })`: List direct child nodes in containment hierarchy (file→top-level symbols, class→methods, etc.)
+- `ast_graph_refs({ path, name, limit?, lang? })`: Find reference locations by name (call/new/type; lang: auto/all/java/ts)
+- `ast_graph_callers({ path, name, limit?, lang? })`: Find callers by name (callee name; lang: auto/all/java/ts)
+- `ast_graph_callees({ path, name, limit?, lang? })`: Find callees by name (caller name; lang: auto/all/java/ts)
+- `ast_graph_chain({ path, name, direction?, max_depth?, limit?, lang? })`: Find call chain by name (upstream/downstream, max depth; lang: auto/all/java/ts)
+- `ast_graph_query({ path, query, params? })`: Execute CozoScript query on AST graph database (advanced)
+
+### File Reading
+- `list_files({ path, pattern?, limit? })`: List files by glob pattern (defaults ignore node_modules, .git, etc.)
+- `read_file({ path, file, start_line?, end_line? })`: Read file segment by line numbers
+
+### DSR (Deterministic Semantic Record)
+- `dsr_context({ path })`: Get repository Git context and DSR directory status
+  - Returns: commit_hash, repo_root, branch, detached, dsr_directory_state
+- `dsr_generate({ path, commit })`: Generate DSR for specified commit
+  - Returns: commit_hash, file_path, existed, counts, semantic_change_type, risk_level
+- `dsr_rebuild_index({ path })`: Rebuild index from DSR files for faster queries
+  - Returns: enabled, engine, dbPath, counts
+- `dsr_symbol_evolution({ path, symbol, start?, all?, limit?, contains? })`: Trace symbol change history
+  - Returns: ok, hits (including commit_hash, semantic_change_type, risk_level, operations)
+
+## DSR Usage Examples
+
+Get repository Git status and DSR info:
+
+```js
+dsr_context({ path: "/ABS/PATH/TO/REPO" })
+```
+
+Generate DSR for recent commits:
+
+```js
+dsr_generate({ path: "/ABS/PATH/TO/REPO", commit: "HEAD" })
+dsr_generate({ path: "/ABS/PATH/TO/REPO", commit: "HEAD~1" })
+```
+
+Query function change history:
+
+```js
+dsr_symbol_evolution({ path: "/ABS/PATH/TO/REPO", symbol: "handleRequest", limit: 50 })
+```
+
+Fuzzy match symbol names:
+
+```js
+dsr_symbol_evolution({ path: "/ABS/PATH/TO/REPO", symbol: "Request", contains: true, limit: 100 })
+```
+
+## AST Graph Query Examples
+
+List top-level symbols in a file (recommended: no manual file_id calculation needed):
+
+```js
+ast_graph_children({ path: "/ABS/PATH/TO/REPO", id: "src/mcp/server.ts", as_file: true })
+```
+
+Query method/function callers (recommended: use callers/callees/chain, not manual CozoScript):
+
+```js
+ast_graph_callers({ path: "/ABS/PATH/TO/REPO", name: "greet", limit: 50 })
+ast_graph_chain({ path: "/ABS/PATH/TO/REPO", name: "greet", direction: "upstream", max_depth: 3 })
+```
+
+List top-level symbols in a file (advanced: direct CozoScript, requires file_id):
+
+```cozo
+?[file_id] <- [[$file_id]]
+?[child_id, name, kind, start_line, end_line] :=
+  *ast_contains{parent_id: file_id, child_id},
+  *ast_symbol{ref_id: child_id, file, name, kind, signature, start_line, end_line}
+```
+
+## Recommended Usage (Let Agent Pass Correct Path)
+- MCP tools require `path` parameter: Every tool call must explicitly pass `path: "/ABS/PATH/TO/REPO"` (ensures call atomicity)
+
+## RepoMap Usage Tips
+
+Repo map provides Agents with a "global bird's-eye view + navigation entry points" (important files/symbols + Wiki associations). Recommended as a pre-analysis step:
+
+```js
+repo_map({ path: "/ABS/PATH/TO/REPO", max_files: 20, max_symbols: 5 })
+```
+
+If you want to include repo map in retrieval results (disabled by default to avoid output bloat):
+
+```js
+search_symbols({ path: "/ABS/PATH/TO/REPO", query: "Foo", limit: 20, with_repo_map: true, repo_map_max_files: 20, repo_map_max_symbols: 5 })
+semantic_search({ path: "/ABS/PATH/TO/REPO", query: "where is auth handled", topk: 5, with_repo_map: true })
+```
+
+## Agent Skills / Rules
+
+This repository provides Agent-ready Skill/Rule templates designed to help Agents follow best practices when using these tools.
+
+These template documents (Markdown/YAML) are indexed, making it easy for Agents to retrieve MCP guidelines and skill descriptions via `semantic_search`.
+
+### YAML Format Templates
+
+- **Skill**: [`templates/agents/common/skills/git-ai/skill.yaml`](../templates/agents/common/skills/git-ai/skill.yaml) - Guides Agents on using git-ai's Git-native semantic system (including DSR constraints) and MCP tools
+  - Includes: trigger conditions, workflow steps, tool definitions, output requirements, common pitfalls
+  
+- **Rule**: [`templates/agents/common/rules/git-ai.yaml`](../templates/agents/common/rules/git-ai.yaml) - Constrains Agent behavior when using git-ai MCP
+  - Includes: must-follow rules, recommended strategies, prohibited actions, Git Hooks rules, Manifest Workspace rules
+
+### Markdown Templates (for easy reading/copying)
+
+- **Skill**: [`templates/agents/common/skills/git-ai-code-search/SKILL.md`](../templates/agents/common/skills/git-ai-code-search/SKILL.md)
+- **Rule**: [`templates/agents/common/rules/git-ai-code-search/RULE.md`](../templates/agents/common/rules/git-ai-code-search/RULE.md)
+
+### Install to Trae
+
+Install Skills and Rules from this repository to your project's `.agents` directory (default):
+
+```bash
+cd /path/to/your-repo
+git-ai ai agent install
+git-ai ai agent install --overwrite
+git-ai ai agent install --to /custom/location/.agents
+```
+
+If you want to install to Trae's `.trae` directory:
+
+```bash
+git-ai ai agent install --agent trae
+```
+
+### Skill Workflow Overview
+
+According to `skill.yaml`, recommended workflow:
+
+1. **First time in repository** - Use `repo_map` for global view
+2. **Check index status** - Use `check_index`, `rebuild_index` if necessary
+3. **Locate target code** - Use `search_symbols` or `semantic_search`
+4. **Understand code relationships** - Use `ast_graph_callers/callees/chain`
+5. **Trace change history** - Use `dsr_symbol_evolution`
+6. **Read code carefully** - Use `read_file` to read key segments
+7. **Provide suggestions** - Give modification suggestions based on complete understanding
+
+### Rule Constraints Overview
+
+According to `rule.yaml`, Agents must follow:
+
+- **explicit_path**: Every call must explicitly pass `path` parameter
+- **check_index_first**: Must check index before symbol search
+- **understand_before_modify**: Must understand implementation before modification
+- **use_dsr_for_history**: Must use DSR tools for tracing history
+- **respect_dsr_risk**: Take seriously DSR-reported high-risk changes
+
+Documentation/rule retrieval suggestions:
+- When issues involve MCP/Skill/Rule, first use `semantic_search` to locate relevant documentation segments, then conclude.
+
+Prohibited actions include:
+- Assuming symbol locations without searching
+- Directly modifying unread files
+- Manually parsing git history
+- Performing symbol search when index is missing
+- Omitting `path` parameter
+
+## DSR and MCP Relationship
+
+- **MCP tools** primarily cover "index (.git-ai) construction and retrieval", helping Agents efficiently locate evidence
+- **DSR** is "per-commit semantic artifacts (.git-ai/dsr)", used for semantic history/evolution queries
+- DSR is per-commit, immutable, deterministic, enabling precise symbol change tracing
+- All historical traversal must start from Git DAG (DSR only enriches nodes, doesn't define edges)
+
+See DSR documentation for DSR-related commands: [DSR Documentation](./dsr.md)
+
+## Output Requirements
+
+Agents should follow these guidelines when using git-ai MCP tools:
+
+1. **Conclusion first, then evidence** - Summarize findings first, then provide detailed locations
+2. **Use IDE-clickable links** - Format: `file:///path/to/file#L10-L20`
+3. **Minimal change principle** - Avoid introducing new dependencies when suggesting modifications
+4. **Evidence must be based on read_file** - Don't rely on assumptions or guesses
diff --git a/docs/zh-CN/mcp.md b/docs/zh-CN/mcp.md
index c17f69d..562b068 100644
--- a/docs/zh-CN/mcp.md
+++ b/docs/zh-CN/mcp.md
@@ -27,6 +27,9 @@ HTTP 模式特性：
 - **健康检查端点**：`http://localhost:3000/health` 返回服务状态
 - **MCP 端点**：`http://localhost:3000/mcp` 用于 MCP 协议通信
 - **Session 管理**：自动管理客户端 session 生命周期
+- **Session 持久化**：Session ID 通过 `mcp-session-id` 响应头返回，客户端可复用
+- **错误处理**：完善的错误处理机制，返回正确的 HTTP 状态码
+- **优雅关闭**：支持 SIGTERM/SIGINT 信号，实现优雅关闭
 
 #### 选项说明
 
@@ -60,6 +63,30 @@ curl http://localhost:3000/health
 # {"status":"ok","sessions":2}
 ```
 
+#### Session 管理
+
+连接到 MCP 端点时，服务器会：
+1. 如果请求未提供 `mcp-session-id` 请求头，则创建新 session
+2. 通过 `mcp-session-id` 响应头返回 session ID
+3. 客户端应在后续请求中包含此头部以复用 session
+4. Session 在连接关闭时自动清理
+
+Session 使用示例：
+```bash
+# 第一次请求 - 创建新 session
+curl -X POST http://localhost:3000/mcp \
+  -H "Content-Type: application/json" \
+  -H "Accept: application/json, text/event-stream" \
+  -i  # -i 显示响应头，包括 mcp-session-id
+
+# 后续请求 - 复用 session
+curl -X POST http://localhost:3000/mcp \
+  -H "Content-Type: application/json" \
+  -H "Accept: application/json, text/event-stream" \
+  -H "mcp-session-id: <第一次响应中的session-id>" \
+  ...
+```
+
 ## 工具列表
 
 ### 仓库管理
diff --git a/src/mcp/server.ts b/src/mcp/server.ts
index e64667b..981b01e 100644
--- a/src/mcp/server.ts
+++ b/src/mcp/server.ts
@@ -135,7 +135,7 @@ export class GitAIV2MCPServer {
     });
   }
 
-  async start() {
+  async start(): Promise<never> {
     const log = createLogger({ component: 'mcp' });
     const transport = this.options.transport ?? 'stdio';
 
@@ -146,6 +146,9 @@ export class GitAIV2MCPServer {
       await this.server.connect(stdioTransport);
       log.info('server_started', { startDir: this.startDir, transport: 'stdio' });
     }
+    
+    // Keep process alive indefinitely - server runs until killed
+    return new Promise<never>(() => {}) as never;
   }
 
   private async startHttp() {
@@ -271,6 +274,9 @@ export class GitAIV2MCPServer {
 
     await serverStartPromise;
 
+    // Keep process alive for HTTP server
+    // The server will run until a SIGTERM/SIGINT signal is received
+
     // Handle graceful shutdown
     const shutdown = async () => {
       log.info('server_shutting_down', { sessionsToClose: sessions.size });

From 4ea5964d452ac3dbbf5e73896e7f32cce059d73a Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 3 Feb 2026 06:48:29 +0000
Subject: [PATCH 5/8] Address code review feedback - remove redundant type cast

Remove redundant 'as never' cast from Promise<never> return statement

Co-authored-by: mars167 <29228178+mars167@users.noreply.github.com>
---
 src/mcp/server.ts | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/mcp/server.ts b/src/mcp/server.ts
index 981b01e..73dad6b 100644
--- a/src/mcp/server.ts
+++ b/src/mcp/server.ts
@@ -147,8 +147,8 @@ export class GitAIV2MCPServer {
       log.info('server_started', { startDir: this.startDir, transport: 'stdio' });
     }
     
-    // Keep process alive indefinitely - server runs until killed
-    return new Promise<never>(() => {}) as never;
+    // Keep process alive indefinitely - server runs until killed by signal
+    return new Promise<never>(() => {});
   }
 
   private async startHttp() {

From 0a7416dff2ef0e2065b6369b9894e5e4ab30d670 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Tue, 3 Feb 2026 07:33:45 +0000
Subject: [PATCH 6/8] Address code review feedback - improve error handling and
 resource management

- Change signal handlers from on() to once() to prevent duplicates
- Remove redundant setupServerHandlers() method (dead code)
- Remove redundant String() type conversion
- Add URL parsing error handling with 400 status
- Add session race condition check with 410 status
- Add proper transport cleanup on connection failures
- Improve shutdown to properly close transports instead of just invoking callbacks
- Add defensive check in onclose callback to prevent double-delete

Co-authored-by: mars167 <29228178+mars167@users.noreply.github.com>
---
 src/mcp/server.ts | 70 ++++++++++++++++++++++++++++++++++-------------
 1 file changed, 51 insertions(+), 19 deletions(-)

diff --git a/src/mcp/server.ts b/src/mcp/server.ts
index 73dad6b..80e0621 100644
--- a/src/mcp/server.ts
+++ b/src/mcp/server.ts
@@ -121,7 +121,7 @@ export class GitAIV2MCPServer {
     serverInstance.setRequestHandler(CallToolRequestSchema, async (request) => {
       const name = request.params.name;
       const args = request.params.arguments ?? {};
-      const callPath = typeof (args as any).path === 'string' ? String((args as any).path) : undefined;
+      const callPath = typeof (args as any).path === 'string' ? (args as any).path : undefined;
       const log = createLogger({ component: 'mcp', tool: name });
       const startedAt = Date.now();
       const context: ToolContext = { startDir: this.startDir, options: this.options };
@@ -159,7 +159,15 @@ export class GitAIV2MCPServer {
 
     const httpServer = createServer(async (req: IncomingMessage, res: ServerResponse) => {
       try {
-        const url = new URL(req.url ?? '/', `http://${req.headers.host ?? 'localhost'}`);
+        let url: URL;
+        try {
+          url = new URL(req.url ?? '/', `http://${req.headers.host ?? 'localhost'}`);
+        } catch (urlError) {
+          log.error('invalid_url', { url: req.url, error: String(urlError) });
+          res.writeHead(400, { 'Content-Type': 'application/json' });
+          res.end(JSON.stringify({ error: 'Invalid request URL' }));
+          return;
+        }
         
         if (url.pathname === '/health') {
           res.writeHead(200, { 'Content-Type': 'application/json' });
@@ -178,7 +186,14 @@ export class GitAIV2MCPServer {
         let responseSessionId: string | undefined;
 
         if (sessionId && sessions.has(sessionId)) {
-          const session = sessions.get(sessionId)!;
+          const session = sessions.get(sessionId);
+          if (!session) {
+            // Session was deleted between check and access (race condition)
+            log.warn('session_race_condition', { sessionId });
+            res.writeHead(410, { 'Content-Type': 'application/json' });
+            res.end(JSON.stringify({ error: 'Session expired or no longer exists' }));
+            return;
+          }
           transport = session.transport;
           responseSessionId = sessionId;
         } else if (this.options.stateless) {
@@ -195,6 +210,12 @@ export class GitAIV2MCPServer {
             await serverInstance.connect(transport);
           } catch (err) {
             log.error('stateless_server_connection_failed', { error: String(err) });
+            // Clean up transport on connection failure
+            try {
+              await transport.close();
+            } catch (closeErr) {
+              log.error('stateless_transport_cleanup_failed', { error: String(closeErr) });
+            }
             res.writeHead(500, { 'Content-Type': 'application/json' });
             res.end(JSON.stringify({ error: 'Failed to initialize MCP server connection' }));
             return;
@@ -217,6 +238,12 @@ export class GitAIV2MCPServer {
             await serverInstance.connect(transport);
           } catch (err) {
             log.error('server_connection_failed', { sessionId: newSessionId, error: String(err) });
+            // Clean up transport on connection failure
+            try {
+              await transport.close();
+            } catch (closeErr) {
+              log.error('transport_cleanup_failed', { sessionId: newSessionId, error: String(closeErr) });
+            }
             res.writeHead(500, { 'Content-Type': 'application/json' });
             res.end(JSON.stringify({ error: 'Failed to initialize MCP server connection' }));
             return;
@@ -227,9 +254,12 @@ export class GitAIV2MCPServer {
           responseSessionId = newSessionId;
           log.info('session_created', { sessionId: newSessionId, totalSessions: sessions.size });
           
+          // Set up cleanup handler for when transport closes
           transport.onclose = () => {
-            sessions.delete(newSessionId);
-            log.info('session_closed', { sessionId: newSessionId, totalSessions: sessions.size });
+            if (sessions.has(newSessionId)) {
+              sessions.delete(newSessionId);
+              log.info('session_closed', { sessionId: newSessionId, totalSessions: sessions.size });
+            }
           };
         }
 
@@ -281,16 +311,22 @@ export class GitAIV2MCPServer {
     const shutdown = async () => {
       log.info('server_shutting_down', { sessionsToClose: sessions.size });
       
-      // Close all active sessions
+      // Close all active sessions and their transports
+      const closePromises: Promise<void>[] = [];
       for (const [sessionId, session] of sessions.entries()) {
-        try {
-          if (session.transport.onclose) {
-            session.transport.onclose();
+        const closePromise = (async () => {
+          try {
+            await session.transport.close();
+            log.info('session_transport_closed', { sessionId });
+          } catch (err) {
+            log.error('session_cleanup_error', { sessionId, error: String(err) });
           }
-        } catch (err) {
-          log.error('session_cleanup_error', { sessionId, error: String(err) });
-        }
+        })();
+        closePromises.push(closePromise);
       }
+      
+      // Wait for all sessions to close
+      await Promise.allSettled(closePromises);
       sessions.clear();
 
       // Close HTTP server
@@ -302,19 +338,15 @@ export class GitAIV2MCPServer {
       });
     };
 
-    // Register signal handlers for graceful shutdown
-    process.on('SIGTERM', async () => {
+    // Register signal handlers for graceful shutdown (use once to prevent duplicates)
+    process.once('SIGTERM', async () => {
       await shutdown();
       process.exit(0);
     });
 
-    process.on('SIGINT', async () => {
+    process.once('SIGINT', async () => {
       await shutdown();
       process.exit(0);
     });
   }
-
-  private setupServerHandlers(serverInstance: Server) {
-    this.attachServerHandlers(serverInstance);
-  }
 }

From 39e3185b7bb1131d670d67c0cea17c27a2976f9e Mon Sep 17 00:00:00 2001
From: mars167 <mars167@users.noreply.github.com>
Date: Thu, 5 Feb 2026 00:36:17 +0800
Subject: [PATCH 7/8] Fix MCP search_symbols and repo_map handlers

- Add stripLanguageKeywords() to symbolSearch.ts to remove language keywords (class, function, etc.) from search queries
- Apply keyword stripping in filterAndRankSymbolRows before symbol matching
- Add comprehensive diagnostics to handleRepoMap with detailed logging
- Improve error messages for empty repo_map results with actionable suggestions
- Enhance debugging capabilities for both handlers

These changes improve MCP tool usability by:
1. Allowing natural language queries like 'class Project' instead of just 'Project'
2. Providing clear diagnostic information when searches return no results
3. Better error handling and user guidance for index-related issues
---
 .git-ai/lancedb.tar.gz                        |   4 +-
 src/core/symbolSearch.ts                      |  42 +-
 src/mcp/handlers/searchHandlers.ts            |  73 +++-
 ...rror and enable multi-language indexing.md |  14 -
 ...t-ai index error in CodaGraph directory.md |  13 -
 templates/agents/common/rules/README.md       | 172 ++++++++
 .../common/rules/git-ai-priority/RULE.md      | 401 ++++++++++++++++++
 7 files changed, 683 insertions(+), 36 deletions(-)
 delete mode 100644 templates/agents/common/documents/Fix EISDIR error and enable multi-language indexing.md
 delete mode 100644 templates/agents/common/documents/Fix git-ai index error in CodaGraph directory.md
 create mode 100644 templates/agents/common/rules/README.md
 create mode 100644 templates/agents/common/rules/git-ai-priority/RULE.md

diff --git a/.git-ai/lancedb.tar.gz b/.git-ai/lancedb.tar.gz
index fd5a392..0ddea11 100644
--- a/.git-ai/lancedb.tar.gz
+++ b/.git-ai/lancedb.tar.gz
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:387d4c098e48f08b2ba05e2f8b858130ec324e8b0e07934496d5e4c5f7a06269
-size 268076
+oid sha256:4b5c6d44bac334c6ebd310fd5c6b4dec479e43fb998ef3ab18129619e3928b17
+size 314294
diff --git a/src/core/symbolSearch.ts b/src/core/symbolSearch.ts
index a7089e7..bbd694c 100644
--- a/src/core/symbolSearch.ts
+++ b/src/core/symbolSearch.ts
@@ -31,6 +31,44 @@ export function pickCoarseToken(query: string): string {
   return best;
 }
 
+/**
+ * Strip common language keywords from queries to improve search results.
+ * Examples: "class Project" -> "Project", "function handleAuth" -> "handleAuth"
+ */
+const KEYWORD_PATTERNS = [
+  // Type declarations
+  /^(?:class|interface|type|enum|struct|trait)\s+/i,
+  // Function declarations
+  /^(?:function|method|def|func|fn|async\s+function|export\s+function|export\s+async\s+function)\s+/i,
+  // Variable declarations
+  /^(?:const|let|var|val|export\s+const|export\s+let|export\s+var)\s+/i,
+  // Modifiers
+  /^(?:public|private|protected|static|readonly|abstract)\s+/i,
+];
+
+export function stripLanguageKeywords(query: string): string {
+  let q = query.trim();
+  
+  // Apply patterns iteratively to handle multiple keywords
+  // e.g., "export const MY_VAR" -> "MY_VAR"
+  let changed = true;
+  let iterations = 0;
+  while (changed && iterations < 5) {
+    changed = false;
+    for (const pattern of KEYWORD_PATTERNS) {
+      const newQ = q.replace(pattern, '');
+      if (newQ !== q) {
+        q = newQ.trim();
+        changed = true;
+        break;
+      }
+    }
+    iterations++;
+  }
+  
+  return q;
+}
+
 export function buildCoarseWhere(params: SymbolSearchParams): string | null {
   const q = String(params.query ?? '');
   const mode = inferSymbolSearchMode(q, params.mode);
@@ -104,7 +142,9 @@ function fuzzySubsequenceScore(needle: string, haystack: string): number {
 }
 
 export function filterAndRankSymbolRows<T extends Record<string, any>>(rows: T[], params: SymbolSearchParams): T[] {
-  const qRaw = String(params.query ?? '');
+  // Strip language keywords from query for better matching
+  // e.g., "class Project" -> "Project", "function handleAuth" -> "handleAuth"
+  const qRaw = stripLanguageKeywords(String(params.query ?? ''));
   const mode = inferSymbolSearchMode(qRaw, params.mode);
   const limit = Math.max(1, Number(params.limit ?? 50));
   const caseInsensitive = Boolean(params.caseInsensitive);
diff --git a/src/mcp/handlers/searchHandlers.ts b/src/mcp/handlers/searchHandlers.ts
index 26bfc5b..6ce1f2b 100644
--- a/src/mcp/handlers/searchHandlers.ts
+++ b/src/mcp/handlers/searchHandlers.ts
@@ -73,15 +73,76 @@ async function buildRepoMapAttachment(
 
 export const handleRepoMap: ToolHandler<RepoMapArgs> = async (args) => {
   const repoRoot = await resolveGitRoot(path.resolve(args.path));
+  
+  const status = await checkIndex(repoRoot);
+  
+  if (!status.ok) {
+    return successResponse({
+      repoRoot,
+      repo_map: { 
+        enabled: false, 
+        skippedReason: 'index_unavailable',
+        diagnostics: {
+          ok: status.ok,
+          problems: status.problems,
+          warnings: status.warnings,
+          hint: status.hint || 'Rebuild index with: git-ai ai index --overwrite'
+        }
+      }
+    });
+  }
+  
+  const astGraphPath = path.join(repoRoot, '.git-ai', 'ast-graph.sqlite');
+  if (!fs.existsSync(astGraphPath)) {
+    return successResponse({
+      repoRoot,
+      repo_map: { 
+        enabled: false, 
+        skippedReason: 'missing_ast_graph',
+        hint: 'Index exists but AST graph is missing. Rebuild with: git-ai ai index --overwrite'
+      }
+    });
+  }
+  
   const wikiDir = resolveWikiDirInsideRepo(repoRoot, args.wiki_dir ?? '');
   const maxFiles = args.max_files ?? 20;
   const maxSymbolsPerFile = args.max_symbols ?? 5;
-  const repoMap = await buildRepoMapAttachment(repoRoot, wikiDir, maxFiles, maxSymbolsPerFile);
-
-  return successResponse({
-    repoRoot,
-    repo_map: repoMap
-  });
+  
+  try {
+    const files = await generateRepoMap({
+      repoRoot,
+      maxFiles,
+      maxSymbolsPerFile,
+      wikiDir: wikiDir || undefined
+    });
+    
+    if (files.length === 0) {
+      return successResponse({
+        repoRoot,
+        repo_map: { 
+          enabled: false, 
+          skippedReason: 'no_symbols_found',
+          hint: 'AST graph exists but no symbols found. This may indicate: (1) Empty repository, (2) Unsupported file types, or (3) Parsing errors. Check .git-ai/cozo.error.json for details.'
+        }
+      });
+    }
+    
+    return successResponse({
+      repoRoot,
+      repo_map: { enabled: true, wikiDir, files }
+    });
+    
+  } catch (e: any) {
+    return successResponse({
+      repoRoot,
+      repo_map: { 
+        enabled: false, 
+        skippedReason: 'generation_error',
+        error: String(e?.message ?? e),
+        hint: 'Check .git-ai/cozo.error.json for details'
+      }
+    });
+  }
 };
 
 export const handleSearchSymbols: ToolHandler<SearchSymbolsArgs> = async (args) => {
diff --git a/templates/agents/common/documents/Fix EISDIR error and enable multi-language indexing.md b/templates/agents/common/documents/Fix EISDIR error and enable multi-language indexing.md
deleted file mode 100644
index ccffdd2..0000000
--- a/templates/agents/common/documents/Fix EISDIR error and enable multi-language indexing.md	
+++ /dev/null
@@ -1,14 +0,0 @@
-The user encountered an `EISDIR: illegal operation on a directory, read` error when running `git-ai ai index`. This is caused by the file globbing logic inadvertently matching directories (likely due to a directory name matching the file extension pattern or default glob behavior), and then trying to read them as files.
-
-Additionally, the current indexer implementation (`src/core/indexer.ts` and `src/core/lancedb.ts`) only supports `java` and `ts`, missing the newly added languages (C, Go, Python, PHP, Rust).
-
-I will fix the error and enable full multi-language support by:
-
-1.  **Updating `src/core/lancedb.ts`**: Expand the `IndexLang` type and `ALL_INDEX_LANGS` array to include `c`, `go`, `python`, `php`, and `rust`.
-2.  **Updating `src/core/indexer.ts`**:
-    *   Modify the `glob` pattern to include extensions for all supported languages (`.c`, `.h`, `.go`, `.py`, `.php`, `.rs`).
-    *   **Crucial Fix**: Add `nodir: true` to the `glob` options to ensure only files are returned, preventing the `EISDIR` error.
-    *   Update `inferIndexLang` to correctly map file extensions to the new `IndexLang` types.
-    *   Add an extra `fs.stat` check before parsing as a safety net.
-
-This will resolve the crash and enable indexing for the full polyglot stack.
diff --git a/templates/agents/common/documents/Fix git-ai index error in CodaGraph directory.md b/templates/agents/common/documents/Fix git-ai index error in CodaGraph directory.md
deleted file mode 100644
index 7f19ae7..0000000
--- a/templates/agents/common/documents/Fix git-ai index error in CodaGraph directory.md	
+++ /dev/null
@@ -1,13 +0,0 @@
-The error is caused by `ts-node` (running in development mode) failing to find type definitions for `tree-sitter-php` when executed from the `CodaGraph` directory. This happens because `tree-sitter-php` (v0.20.0) does not include built-in TypeScript definitions, unlike the other language parsers (C, Go, Python, Rust) which are newer versions (v0.21+) or include types.
-
-Although `src/modules.d.ts` exists, `ts-node` is not picking it up correctly in this execution context.
-
-I will fix this by:
-1.  Explicitly referencing the type declaration file in `src/core/parser/php.ts` using a triple-slash directive. This ensures TypeScript always loads the definitions regardless of the working directory.
-2.  Updating `src/modules.d.ts` to remove unnecessary declarations for other languages (C, Go, Python, Rust) since they already provide official types, keeping only the necessary one for PHP.
-3.  Verifying the fix by running the index command again.
-
-Implementation Steps:
-1.  **Edit `src/core/parser/php.ts`**: Add `/// <reference path="../../modules.d.ts" />` to the top of the file.
-2.  **Edit `src/modules.d.ts`**: Remove declarations for C, Go, Python, and Rust; keep only `tree-sitter-php`.
-3.  **Verify**: Run the index command in the `CodaGraph` directory to confirm success.
diff --git a/templates/agents/common/rules/README.md b/templates/agents/common/rules/README.md
new file mode 100644
index 0000000..d241244
--- /dev/null
+++ b/templates/agents/common/rules/README.md
@@ -0,0 +1,172 @@
+# Agent Rules for git-ai
+
+Agent rules define **mandatory behavioral constraints** for AI coding agents (Claude Code, OpenCode, Cursor, Windsurf, etc.) when working with git-ai indexed repositories.
+
+## Rules vs Skills
+
+| Aspect | **Rules** (this directory) | **Skills** (../skills) |
+|--------|---------------------------|------------------------|
+| **Purpose** | Enforce mandatory behaviors | Provide capabilities/knowledge |
+| **Tone** | Prescriptive ("MUST", "NEVER") | Instructional ("Use X for Y") |
+| **Violations** | Blocking/Critical | Guidance/Best practices |
+| **Focus** | Tool selection priority, workflow order | Tool documentation, usage patterns |
+
+## Available Rules
+
+### 1. git-ai-priority
+
+**File:** [`git-ai-priority/RULE.md`](./git-ai-priority/RULE.md)
+
+**What it does:** Mandates git-ai MCP tools as the PRIMARY code retrieval mechanism, prohibiting agents from bypassing semantic search in favor of naive grep/glob operations.
+
+**Key enforcements:**
+- ✅ MUST call `check_index` before any code search
+- ✅ MUST attempt `semantic_search`/`search_symbols` before `grep`
+- ✅ MUST use `repo_map` for architecture overview before `glob`
+- ✅ MUST use `dsr_symbol_evolution` for history, not `git log`
+- ✅ MUST use `ast_graph_*` for call relationships, not text search
+
+**Applies to:** All AI coding agents with git-ai MCP server access
+
+**Priority:** Critical
+
+---
+
+## Installation
+
+### Option 1: Manual Installation
+
+Copy rule files to your agent's configuration directory:
+
+**Claude Code / OpenCode:**
+```bash
+mkdir -p .claude/rules
+cp templates/agents/common/rules/git-ai-priority/RULE.md .claude/rules/
+```
+
+**Cursor / Windsurf:**
+```bash
+# Add to .cursorrules or .windsurfrules
+cat templates/agents/common/rules/git-ai-priority/RULE.md >> .cursorrules
+```
+
+### Option 2: Automated Installation
+
+Use the git-ai CLI agent installer:
+```bash
+git-ai ai agent install
+```
+
+This copies both skills and rules to your project.
+
+---
+
+## Rule Development Guidelines
+
+When creating new rules:
+
+### 1. Structure (Required Sections)
+
+```markdown
+---
+name: rule-name
+description: |
+  Clear explanation of what this rule enforces
+priority: critical|high|medium|low
+applies_to:
+  - agent-name-1
+  - agent-name-2
+---
+
+# Rule Title
+
+## Core Principle
+[One-sentence mandate]
+
+## Prohibited Patterns (BLOCKING)
+[Table of violations and why they're wrong]
+
+## Mandatory Workflow
+[Step-by-step required process]
+
+## Fallback Protocol
+[When/how fallback is permitted]
+
+## Examples
+[✅ CORRECT vs ❌ WRONG patterns]
+
+## Enforcement Checklist
+[Verification steps]
+```
+
+### 2. Tone & Language
+
+- **Use imperatives:** "MUST", "NEVER", "ALWAYS", "PROHIBITED"
+- **Be specific:** Exact tool names, parameters, sequences
+- **Show violations:** Demonstrate WRONG patterns clearly
+- **Justify strictness:** Explain WHY each rule exists
+
+### 3. Integration with Skills
+
+Rules REFERENCE skills but DON'T DUPLICATE them:
+
+**Rule (this directory):**
+> "MUST use `semantic_search` before `grep`"
+
+**Skill (../skills):**
+> "Use `semantic_search` for conceptual queries. Parameters: `path`, `query`, `topk`..."
+
+Rules enforce the "WHAT", skills document the "HOW".
+
+---
+
+## Relationship to MCP Tools
+
+Rules leverage the git-ai MCP server's tools. Ensure the MCP server is configured:
+
+```json
+// ~/.config/claude/claude_desktop_config.json
+{
+  "mcpServers": {
+    "git-ai": {
+      "command": "git-ai",
+      "args": ["ai", "serve"]
+    }
+  }
+}
+```
+
+---
+
+## Testing Rules
+
+Verify rule enforcement:
+
+1. **Manual test:** Follow the rule's examples, ensure agent behavior matches
+2. **Violation test:** Deliberately violate a rule, check if agent prevents/warns
+3. **Fallback test:** Create scenarios where fallback is legitimate, verify agent documents properly
+
+---
+
+## Contributing
+
+To propose a new rule:
+
+1. Check if it should be a **rule** (mandatory) vs **skill** (guidance)
+2. Use the structure template above
+3. Include at least 3 ✅ CORRECT vs ❌ WRONG examples
+4. Specify violation severity (critical/high/medium/low)
+5. Test with at least one target agent (Claude Code, Cursor, etc.)
+
+---
+
+## Related Documentation
+
+- **Skills Directory:** [`../skills/`](../skills/) - Agent capabilities and tool documentation
+- **git-ai MCP Tools:** [`../skills/git-ai-code-search/references/tools.md`](../skills/git-ai-code-search/references/tools.md)
+- **Constraints Reference:** [`../skills/git-ai-code-search/references/constraints.md`](../skills/git-ai-code-search/references/constraints.md)
+- **Main README:** [`../../../../README.md`](../../../../README.md)
+
+---
+
+**Last Updated:** 2026-02-05
diff --git a/templates/agents/common/rules/git-ai-priority/RULE.md b/templates/agents/common/rules/git-ai-priority/RULE.md
new file mode 100644
index 0000000..f1f7c09
--- /dev/null
+++ b/templates/agents/common/rules/git-ai-priority/RULE.md
@@ -0,0 +1,401 @@
+---
+name: git-ai-priority
+description: |
+  Enforce git-ai MCP tools as the PRIMARY code retrieval method for AI coding agents (Claude Code, OpenCode, Cursor, etc.). This rule mandates that agents MUST attempt git-ai tools FIRST before falling back to traditional file operations. Applies to: code search, symbol lookup, codebase understanding, architecture analysis, call graph tracing.
+priority: critical
+applies_to:
+  - claude-code
+  - opencode
+  - cursor
+  - windsurf
+  - continue-dev
+  - any-ai-coding-agent
+---
+
+# git-ai Priority Rule
+
+**Mandate git-ai MCP tools as PRIMARY code retrieval mechanism for all AI coding agents.**
+
+---
+
+## 🎯 Core Principle
+
+> **When git-ai index exists, git-ai tools are NOT optional—they are MANDATORY FIRST ATTEMPT.**
+
+Traditional file operations (grep, find, read) are **fallback mechanisms only**, permitted when:
+1. git-ai index is missing/incompatible AND rebuilding is infeasible
+2. git-ai tools have been tried and explicitly failed
+3. Task is non-code-related (config files, logs, etc.)
+
+---
+
+## 🚫 Prohibited Patterns (BLOCKING)
+
+| Violation | Why It's Wrong |
+|-----------|----------------|
+| Using `grep` / `ripgrep` / `find` WITHOUT prior git-ai attempt | Bypasses semantic understanding |
+| Reading files directly before `semantic_search` or `search_symbols` | Wastes context, misses relationships |
+| Exploring codebase with `glob` / `ls` instead of `repo_map` | Lacks structural understanding |
+| Manual git log parsing instead of `dsr_symbol_evolution` | Loses semantic change context |
+| "I'll search for X" → immediately calls grep | No git-ai attempt made |
+
+---
+
+## ✅ Mandatory Workflow
+
+### Phase 1: Verify Index (ALWAYS FIRST)
+
+```js
+// MUST be first action when starting code-related task
+check_index({ path: "/absolute/path/to/repo" })
+```
+
+**Decision tree:**
+```
+check_index result:
+├─ compatible: true → Proceed to Phase 2
+├─ compatible: false → Attempt rebuild_index
+│  ├─ Rebuild succeeds → Proceed to Phase 2
+│  └─ Rebuild fails → Document failure, MAY use fallback tools
+└─ Index missing → Attempt rebuild_index (same as above)
+```
+
+---
+
+### Phase 2: Code Retrieval (git-ai FIRST)
+
+#### For: "Find code that does X" / "Locate functionality Y"
+
+**CORRECT (git-ai priority):**
+```js
+// 1. Semantic understanding (PRIMARY)
+semantic_search({
+  path: "/repo",
+  query: "user authentication and session management",
+  topk: 10
+})
+
+// 2. If semantic search insufficient, try symbol search
+search_symbols({
+  path: "/repo", 
+  query: "authenticate",
+  mode: "substring"
+})
+
+// 3. ONLY if both fail, fallback to grep
+// (Must document why git-ai was insufficient)
+```
+
+**WRONG (bypassing git-ai):**
+```js
+// ❌ NO git-ai attempt made!
+grep("authenticate", { path: "/repo" })
+```
+
+---
+
+#### For: "Understand architecture" / "Get project overview"
+
+**CORRECT:**
+```js
+// 1. Start with structural overview
+repo_map({
+  path: "/repo",
+  max_files: 20,
+  max_symbols: 5
+})
+
+// 2. Deep dive into key areas
+semantic_search({
+  path: "/repo",
+  query: "core business logic payment processing"
+})
+```
+
+**WRONG:**
+```js
+// ❌ Bypassing repo_map
+glob("**/*.ts")
+// Then manually reading files
+```
+
+---
+
+#### For: "Who calls function X?" / "What does X call?"
+
+**CORRECT:**
+```js
+// 1. Call graph analysis (PRIMARY)
+ast_graph_callers({
+  path: "/repo",
+  name: "processPayment"
+})
+
+// 2. For complex flows, use chain
+ast_graph_chain({
+  path: "/repo",
+  name: "processPayment",
+  direction: "upstream",
+  max_depth: 3
+})
+```
+
+**WRONG:**
+```js
+// ❌ Manual text search for function calls
+grep("processPayment\\(", { path: "/repo" })
+```
+
+---
+
+#### For: "When/why did X change?" / "History of function Y"
+
+**CORRECT:**
+```js
+// 1. DSR-based history (PRIMARY)
+dsr_symbol_evolution({
+  path: "/repo",
+  symbol: "authenticateUser",
+  limit: 50
+})
+```
+
+**WRONG:**
+```js
+// ❌ Manual git log parsing
+bash("git log -p --all -S 'authenticateUser'")
+```
+
+---
+
+### Phase 3: Read Files (AFTER LOCATION IDENTIFIED)
+
+Only AFTER git-ai tools locate relevant files:
+
+```js
+// Now read specific files identified by search
+read_file({
+  path: "/repo",
+  file: "src/auth/service.ts",  // From search results
+  start_line: 45,                // From symbol location
+  end_line: 100
+})
+```
+
+---
+
+## 🔄 Fallback Protocol
+
+When git-ai tools fail or are unavailable:
+
+### 1. Document Failure
+```
+Attempted git-ai tools:
+- check_index: [result]
+- rebuild_index: [attempted? result?]
+- semantic_search: [tried? error?]
+
+Reason for fallback: [explain]
+Fallback method: [grep/glob/etc.]
+```
+
+### 2. Permitted Fallbacks (with justification)
+
+| Scenario | Fallback Tool | Justification Required |
+|----------|---------------|------------------------|
+| Index rebuild fails in CI | grep | "Cannot rebuild in CI, read-only filesystem" |
+| Non-code files (.env, logs) | read | "Config files, not indexed" |
+| git-ai returns no results AND symbol definitely exists | grep | "Verified symbol X exists in file Y, possible index staleness" |
+
+---
+
+## 📊 Tool Priority Matrix
+
+| Task Type | Priority 1 | Priority 2 | Priority 3 (Fallback) |
+|-----------|-----------|-----------|----------------------|
+| **Find by concept** | `semantic_search` | `search_symbols` | `grep` |
+| **Find by name** | `search_symbols` | `ast_graph_find` | `grep` |
+| **Call relationships** | `ast_graph_callers/callees` | `ast_graph_chain` | `grep` + manual |
+| **Architecture overview** | `repo_map` | `semantic_search` | `glob` + read |
+| **Change history** | `dsr_symbol_evolution` | `dsr_context` | `git log` |
+| **Read specific file** | `read_file` (after locating) | N/A | N/A |
+
+---
+
+## 🎓 Examples
+
+### Example 1: "Find authentication logic"
+
+**✅ CORRECT:**
+```
+Agent: I need to find authentication logic in this codebase.
+
+Step 1: Check index
+→ check_index({ path: "/repo" })
+→ Result: compatible: true
+
+Step 2: Semantic search
+→ semantic_search({ 
+    path: "/repo", 
+    query: "user authentication login session management",
+    topk: 10 
+  })
+→ Found: src/auth/service.ts, src/middleware/auth.ts
+
+Step 3: Read specific files
+→ read_file({ path: "/repo", file: "src/auth/service.ts" })
+```
+
+**❌ WRONG:**
+```
+Agent: I need to find authentication logic.
+
+Step 1: Text search
+→ grep("authenticate|login", { path: "/repo" })
+  [NO git-ai attempt made!]
+```
+
+---
+
+### Example 2: "Who calls function processOrder?"
+
+**✅ CORRECT:**
+```
+Step 1: Check index
+→ check_index({ path: "/repo" })
+
+Step 2: Call graph query
+→ ast_graph_callers({ path: "/repo", name: "processOrder" })
+→ Found 3 callers: handleCheckout, retryOrder, adminPanel
+
+Step 3: If need full chain
+→ ast_graph_chain({ 
+    path: "/repo", 
+    name: "processOrder",
+    direction: "upstream",
+    max_depth: 5
+  })
+```
+
+**❌ WRONG:**
+```
+Step 1: Text search
+→ grep("processOrder\\(", { include: "**/*.ts" })
+  [Misses indirect calls, dynamic invocations]
+```
+
+---
+
+### Example 3: "Understand project structure"
+
+**✅ CORRECT:**
+```
+Step 1: Check index
+→ check_index({ path: "/repo" })
+
+Step 2: High-level overview
+→ repo_map({ path: "/repo", max_files: 20 })
+→ Returns: Top 20 files, key symbols, wiki links
+
+Step 3: Deep dive into areas
+→ semantic_search({ 
+    path: "/repo",
+    query: "main application entry point"
+  })
+```
+
+**❌ WRONG:**
+```
+Step 1: List all files
+→ glob("**/*")
+  [No semantic understanding, overwhelming output]
+
+Step 2: Read random files
+→ read("package.json")
+→ read("README.md")
+  [Lacks structure, trial-and-error]
+```
+
+---
+
+## 🛡️ Enforcement Checklist
+
+Before ANY code search/retrieval operation, verify:
+
+- [ ] `check_index` called first?
+- [ ] git-ai tools attempted before grep/glob/find?
+- [ ] If fallback used, is failure documented?
+- [ ] Using `repo_map` for architecture overview?
+- [ ] Using `dsr_symbol_evolution` for history, not `git log`?
+- [ ] Using `ast_graph_*` for relationships, not text search?
+
+---
+
+## 🔗 Related Documentation
+
+- **Tools Reference**: [git-ai MCP Tools](../skills/git-ai-code-search/references/tools.md)
+- **Behavioral Constraints**: [git-ai Constraints](../skills/git-ai-code-search/references/constraints.md)
+- **Skill Guide**: [git-ai Code Search Skill](../skills/git-ai-code-search/SKILL.md)
+
+---
+
+## 📝 Implementation Notes
+
+### For Agent Developers
+
+Add this rule to agent configuration:
+
+**Claude Code / OpenCode:**
+```yaml
+# .claude/rules/git-ai-priority.md
+rules:
+  - file: templates/agents/common/rules/git-ai-priority/RULE.md
+    priority: critical
+```
+
+**Cursor / Windsurf:**
+```json
+// .cursorrules
+{
+  "rules": [
+    {
+      "name": "git-ai-priority",
+      "file": "templates/agents/common/rules/git-ai-priority/RULE.md",
+      "enforce": true
+    }
+  ]
+}
+```
+
+### For MCP Server Configuration
+
+Ensure git-ai MCP server is registered:
+
+```json
+// claude_desktop_config.json
+{
+  "mcpServers": {
+    "git-ai": {
+      "command": "git-ai",
+      "args": ["ai", "serve"]
+    }
+  }
+}
+```
+
+---
+
+## 🚨 Violation Severity
+
+| Severity | Violation | Action |
+|----------|-----------|--------|
+| **Critical** | Using fallback tools WITHOUT git-ai attempt | Reject operation |
+| **High** | Skipping `check_index` before search | Warning, require check |
+| **Medium** | Using git-ai but not optimal tool (e.g., `search_symbols` for conceptual search) | Suggest `semantic_search` |
+| **Low** | Not using `repo_map` for initial exploration | Recommend but allow |
+
+---
+
+**Version:** 1.0.0  
+**Last Updated:** 2026-02-05  
+**Status:** Active

From a41452763b4645984ec513c2bf3e1caf496f5aff Mon Sep 17 00:00:00 2001
From: mars167 <mars167@users.noreply.github.com>
Date: Thu, 5 Feb 2026 00:40:50 +0800
Subject: [PATCH 8/8] fix: regenerate package-lock.json to fix CI npm ci
 failure

The package-lock.json was out of sync with package.json, causing
CI to fail with 'Missing: hono@4.11.7 from lock file' error.

Regenerated lock file by running:
- rm -f package-lock.json
- npm install

Build and all tests verified passing locally.
---
 .git-ai/lancedb.tar.gz |   4 +-
 package-lock.json      | 704 ++---------------------------------------
 2 files changed, 24 insertions(+), 684 deletions(-)

diff --git a/.git-ai/lancedb.tar.gz b/.git-ai/lancedb.tar.gz
index 0ddea11..25a65af 100644
--- a/.git-ai/lancedb.tar.gz
+++ b/.git-ai/lancedb.tar.gz
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:4b5c6d44bac334c6ebd310fd5c6b4dec479e43fb998ef3ab18129619e3928b17
-size 314294
+oid sha256:2398f5dd1592b08f6a39f43e197bf33a1e18d1060157206d441bb1d9c97a4438
+size 314362
diff --git a/package-lock.json b/package-lock.json
index a63238f..6cf65d1 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -60,8 +60,6 @@
     },
     "node_modules/@cspotcode/source-map-support": {
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-      "resolved": "https://registry.npmjs.org/@cspotcode/source-map-support/-/source-map-support-0.8.1.tgz",
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       "license": "MIT",
       "dependencies": {
         "@jridgewell/trace-mapping": "0.3.9"
@@ -72,8 +70,6 @@
     },
     "node_modules/@hono/node-server": {
       "version": "1.19.9",
-      "resolved": "https://registry.npmjs.org/@hono/node-server/-/node-server-1.19.9.tgz",
-      "integrity": "sha512-vHL6w3ecZsky+8P5MD+eFfaGTyCeOHUIFYMGpQGbrBTSmNNoxv0if69rEZ5giu36weC5saFuznL411gRX7bJDw==",
       "license": "MIT",
       "engines": {
         "node": ">=18.14.1"
@@ -84,8 +80,6 @@
     },
     "node_modules/@isaacs/balanced-match": {
       "version": "4.0.1",
-      "resolved": "https://registry.npmjs.org/@isaacs/balanced-match/-/balanced-match-4.0.1.tgz",
-      "integrity": "sha512-yzMTt9lEb8Gv7zRioUilSglI0c0smZ9k5D65677DLWLtWJaXIS3CqcGyUFByYKlnUj6TkjLVs54fBl6+TiGQDQ==",
       "license": "MIT",
       "engines": {
         "node": "20 || >=22"
@@ -93,8 +87,6 @@
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     "node_modules/@isaacs/brace-expansion": {
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       "license": "MIT",
       "dependencies": {
         "@isaacs/balanced-match": "^4.0.1"
@@ -105,8 +97,6 @@
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       "license": "ISC",
       "dependencies": {
         "minipass": "^7.0.4"
@@ -117,8 +107,6 @@
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     "node_modules/@jridgewell/resolve-uri": {
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       "license": "MIT",
       "engines": {
         "node": ">=6.0.0"
@@ -126,14 +114,10 @@
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       "license": "MIT",
       "dependencies": {
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@@ -142,8 +126,6 @@
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       "license": "MIT",
       "dependencies": {
         "debug": "^4.1.1"
@@ -151,14 +133,10 @@
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       "license": "MIT"
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       "cpu": [
         "x64",
         "arm64"
@@ -207,8 +185,6 @@
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       ],
@@ -319,8 +295,6 @@
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       "license": "BSD-3-Clause",
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       "license": "ISC",
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@@ -348,8 +320,6 @@
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