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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1- [ ![ DOI] ( https://zenodo.org/badge/DOI/10.5281/zenodo.4549759 .svg )] ( https://doi.org/10.5281/zenodo.4549759 )
1+ [ ![ DOI] ( https://zenodo.org/badge/DOI/10.5281/zenodo.4553821 .svg )] ( https://doi.org/10.5281/zenodo.4553821 )
22# diffBUM-HMM
33Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data
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@@ -35,8 +35,8 @@ In our paper (currently a preprint available from BioRxiv: [Marangio2020](https:
3535| S3 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_3/instructions_SF3.txt ) | N/A |
3636| S4 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_4/instructions_SF4.txt ) | N/A |
3737| S5 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_5/instructions_SF5.txt ) | N/A |
38- | S6 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_5 /instructions_SF6.txt ) | [ Notebook] ( ./Jupyter_notebooks/Supplementary_Figure_6/Plotting_5'ETS_and_35S_data-Region_405-502_with_DOR.ipynb ) |
39- | S7 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_5 /instructions_SF7.txt ) | [ Notebook] ( ./Jupyter_notebooks/Supplementary_Figure_7/Plotting_5'ETS_and_35S_data_with_deltaSHAPE_replicates.ipynb ) |
38+ | S6 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_6 /instructions_SF6.txt ) | [ Notebook] ( ./Jupyter_notebooks/Supplementary_Figure_6/Plotting_5'ETS_and_35S_data-Region_405-502_with_DOR.ipynb ) |
39+ | S7 | [ Instructions] ( ./Jupyter_notebooks/Supplementary_Figure_7 /instructions_SF7.txt ) | [ Notebook] ( ./Jupyter_notebooks/Supplementary_Figure_7/Plotting_5'ETS_and_35S_data_with_deltaSHAPE_replicates.ipynb ) |
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4141The table above only includes instructions for figures (or subpanels of figures) from the paper that have been generated programmatically.
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