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Handle sex as 0/1, 1/2 #15

@tmajaria

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@tmajaria

Single var pipeline currently errors out if sex is not encoded as M/F in phenotype file.

The pipeline should be able to handle 4 cases of sex encoding:
0/1 = M/F
1/2 = M/F
m/f = M/F
M/F = M/F

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