example/Singularity at master · lizolson/example · GitHub

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#-----------------------
#updates:

# 2019-06-05
# pytorch 1.1.0
#-----------------------

Bootstrap: docker
#Python version: 3.6.4
From: continuumio/anaconda3:5.1.0

%post
export PATH=/opt/conda/bin:$PATH

#update
apt-get update
apt-get install -y tree
apt-get install -y vim
conda update conda
pip install --upgrade pip

##tensorflow
#conda install tensorflow-gpu==1.13.0
conda install tensorflow-gpu==1.14.0

# conda install -c anaconda scikit-image==0.14.2

#pytorch
conda install -c pytorch pytorch==1.1.0 torchvision==0.3.0 cudatoolkit=9.0

#theano
#apt-get install -y build-essential
#conda install -c conda-forge theano==1.0.4
#conda install mkl-service

#opencv
conda install -c anaconda opencv==3.4.2

#scikit-learn
conda install -c anaconda scikit-learn==0.20.3

#simpleitk
conda install -c simpleitk simpleitk==1.2.0

#niftynet
conda install -c anaconda pyyaml==3.13
pip install niftynet==0.5.0

#niwidgets
pip install niwidgets==0.1.3