Hello,
I am currently using the loompy python module to combine together multiple loom files into one using loompy.combine.
The function calls internally add_loom which, in turn, calls batch_scan_layers (Line 471)
batch_scan_layers is unfortunately hardcoded as deprecated.
Any call of loompy.combine on a list of more than 2 loom files works as intended but reports the following warning for each processed file:
WARNING:root:╭── 'batch_scan_layers' is deprecated. Use 'scan' instead
WARNING:root:╰──> at <my_conda_env>/lib/python3.8/site-packages/loompy/loompy.py, line 465
Would it be possible to update add_loom as suggested by the warning in order to avoid cluttered output and possible future breakage of the function?
Hello,
I am currently using the loompy python module to combine together multiple loom files into one using
loompy.combine.The function calls internally
add_loomwhich, in turn, callsbatch_scan_layers(Line 471)batch_scan_layersis unfortunately hardcoded as deprecated.Any call of
loompy.combineon a list of more than 2 loom files works as intended but reports the following warning for each processed file:WARNING:root:╭── 'batch_scan_layers' is deprecated. Use 'scan' insteadWARNING:root:╰──> at <my_conda_env>/lib/python3.8/site-packages/loompy/loompy.py, line 465Would it be possible to update
add_loomas suggested by the warning in order to avoid cluttered output and possible future breakage of the function?