Cell type annotation

[JABioinf]

Dear Linnarsson Lab team,
Thank you for making available that great dataset ahead of publication! I successfully used it as a reference dataset to project and identified my in vitro neural dataset. I was wondering if you have additional annotations of cells available for this dataset, such as identified cell types/lineage by clusters or by cells. The metadata includes location of origin in great details as well as general cell type (glia/neuron/neuroblast) and autoannotation column, but I was wondering if your report/publication will include more refined naming of cell types (e.g., "dopamine neurons of the midbrain","Layer 5 EN of the cortex", etc.)? (This is a question and not actually an issue).
All the best for the review process on this great resource!

[yojetsharma]

Dear Linnarsson Lab team,
Thank you for making available that great dataset ahead of publication! I successfully used it as a reference dataset to project and identified my in vitro neural dataset. I was wondering if you have additional annotations of cells available for this dataset, such as identified cell types/lineage by clusters or by cells. The metadata includes location of origin in great details as well as general cell type (glia/neuron/neuroblast) and autoannotation column, but I was wondering if your report/publication will include more refined naming of cell types (e.g., "dopamine neurons of the midbrain","Layer 5 EN of the cortex", etc.)? (This is a question and not actually an issue).
All the best for the review process on this great resource!

Hi! I am new to this and also in need to use the reference dataset to identify populations of cells that I have generated. I was wondering if you could share your code/give an overview of how you did it?
Thanks!